Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme17553g00001 CAAAACATTAGGAAGTTGGTTAAGGATGGGTTTATTATTCGGAAACCAACAAAGATTCACTCCCGTTCACGTGCTCGCAGGATGAAGGAAGCTAAGAGGAAGGGACGTCATTCTGGATACGGTAAGCGCAAGGGTACAAGGGAGGCAAGACTTCCTACCAAAATTCTTTGGATGAGAAGGATGCGTGTGCTTAGACGATTGCTTCGAAAGTACAGGGAGTCAAAGAAAATTGACAAACACATGTACCATGATATGTACATGAAGGTTAAGGGTAATGTTTTCAAGAACAAGAGAGTCTTGATGGAGAGCATTCACAAGTCCAAGGCAGAGAAGGCAAGAGAGAAGACTTTGTCTGACCAGTTTGAGGCAAAGCGTGCAAAGAAYAAGGCAAGCAGGGAAAGGAAATTTGCTAGGCGTGAGGAACGATTCGCTCAAGGTCCTGGTGAAAAGCAACCTGCACCCACTGCTCCACCTGCCACAACACCCCAACCTACCCAGGCGCCAAAGAAAACCAAGAA 518 0.4614 QNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKFARREERFAQGPGEKQPAPTAPPATTPQPTQAPKKTK 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme17553g00001 172 MobiDBLite consensus disorder prediction 106 146 - -
Trme17553g00001 172 MobiDBLite consensus disorder prediction 106 172 - -
Trme17553g00001 172 Pfam Ribosomal protein L19e 1 107 IPR000196 GO:0003735|GO:0005840|GO:0006412
Trme17553g00001 172 SMART Ribosomal_L19e_2 1 108 IPR000196 GO:0003735|GO:0005840|GO:0006412
Trme17553g00001 172 MobiDBLite consensus disorder prediction 17 41 - -
Trme17553g00001 172 SUPERFAMILY Ribosomal protein L19 (L19e) 1 106 IPR035970 GO:0003735|GO:0005840|GO:0006412
Trme17553g00001 172 Gene3D - 19 151 - -
Trme17553g00001 172 PANTHER 60S RIBOSOMAL PROTEIN L19 1 150 IPR039547 GO:0003723|GO:0003735|GO:0022625
Trme17553g00001 172 FunFam Ribosomal protein L19 19 153 - -
Trme17553g00001 172 MobiDBLite consensus disorder prediction 16 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme17553g00001 Trme-Chr17553 15 927 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme17553g00001 1 170 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 85.294 1.80e-100 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme17553g00001 K02885 - aew:130772320 277.715