Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme175423g00001 ATGGGTTCGAAACTAACAGGGAAGGTGAAATGGTTCAACGATCAGAAGGGGTTTGGTTTCATCACCCCTGATGATGGTTCTGAGGAGCTTTTCGTTCATCAATCTCAGATCCAGACTGACGGTTTCCGTAGCCTTGCTGAAGGAGAGTCTGTTGAGTATCAGATCGAATCTGATAACGACGGACGATCTAAGGCTGTTAATGTTACTGGACCTGATGGTGCTAATGTTCAAGGAACCAGACGCGGCGGTGGTGGCGGCGGAGGTTATGAGCGTGGTGGAGGCGGTTATGGCGGTGGTGGATATGGTGGTGGAGGTGGTGGATATAGTGGTGGAGGCGGTTATGGTGGTGGAAGAGGCGGAGGAGGCTATGGCGGTGGCGGAGGAGGCTATGGTGGCGGTGGAGGACGTGGAGGAGGACGTGGTGGAGGCGGCGGTGGC 438 0.5525 MGSKLTGKVKWFNDQKGFGFITPDDGSEELFVHQSQIQTDGFRSLAEGESVEYQIESDNDGRSKAVNVTGPDGANVQGTRRGGGGGGGYERGGGGYGGGGYGGGGGGYSGGGGYGGGRGGGGYGGGGGGYGGGGGRGGGRGGGGGG 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme175423g00001 146 PRINTS Cold shock protein signature 28 37 IPR002059 GO:0003676
Trme175423g00001 146 PRINTS Cold shock protein signature 43 61 IPR002059 GO:0003676
Trme175423g00001 146 PRINTS Cold shock protein signature 7 22 IPR002059 GO:0003676
Trme175423g00001 146 ProSiteProfiles Cold-shock (CSD) domain profile. 4 70 IPR002059 GO:0003676
Trme175423g00001 146 CDD CSP_CDS 6 70 IPR002059 GO:0003676
Trme175423g00001 146 Gene3D - 2 82 IPR012340 -
Trme175423g00001 146 PANTHER COLD SHOCK DOMAIN PROTEIN 2 4 138 - -
Trme175423g00001 146 SMART csp_8 6 71 IPR011129 GO:0003676
Trme175423g00001 146 MobiDBLite consensus disorder prediction 60 74 - -
Trme175423g00001 146 ProSitePatterns Cold-shock (CSD) domain signature. 18 37 IPR019844 -
Trme175423g00001 146 MobiDBLite consensus disorder prediction 55 146 - -
Trme175423g00001 146 Pfam 'Cold-shock' DNA-binding domain 6 70 IPR002059 GO:0003676
Trme175423g00001 146 SUPERFAMILY Nucleic acid-binding proteins 4 70 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme175423g00001 Trme-Chr175423 1 438 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Trme175423g00001 CSD 2e-28 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme175423g00001 - - cam:101490833 150.599