Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme175392g00001 ATGTCCAAATCAGAGAAACAAGAGAGAGCAGATTTCATAATTAAAGAAATGGGGCTACAAGATTCAATCAACACAAGAATTGGAGGATGGAAATCCAAAGRCATTAGTGGTGGACAAAAGAGAAGAGTTAGCATTTGCATTGAGATWTTAACACATCCTAGACTTCTCTTTCTTGATGAACCAACAAGTGGACTTGATAGTGCAGCTTCTTATCATGTTATGAGTAGAATTTCTGGTTTAAATAAAATGGATGTTTACTTTGGACCTGTCTCGGCTGCAAATAAGGTTGGAAATGGATTCTTTAAACCACTTAACACACCAGTGTTGTCAAATAGCGGCTATATATAG 348 0.3621 MSKSEKQERADFIIKEMGLQDSINTRIGGWKSKXISGGQKRRVSICIEILTHPRLLFLDEPTSGLDSAASYHVMSRISGLNKMDVYFGPVSAANKVGNGFFKPLNTPVLSNSGYI 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme175392g00001 115 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 82 IPR027417 -
Trme175392g00001 115 Gene3D - 1 86 IPR027417 -
Trme175392g00001 115 Pfam ABC transporter 5 63 IPR003439 GO:0005524
Trme175392g00001 115 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 1 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme175392g00001 Trme-Chr175392 23 466 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme175392g00001 12 67 Calmodulin-binding Proteins AT2G36910 46.429 7.48e-08 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme175392g00001 K05681 - gmx:100792958 152.91