Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme175363g00001 ATGGTTGTACCTCCCTCTCTGTTGGATTTTACGAAGGAGATGATTGCTAAGTCCGATGATAAAACCGTTCTGGCAACCTACCTCTTGCGTGAAATAGAGGAGGACTCTCATTTGCTTGCCCTTTTCAAGCCTATTGGTGATGTGAGCAGTGCCAAGCTTGCTATTGCTCCAAAAACTGGCACTAGTGGGGCATATGGCTTTGTTACCTTTGTCACCAAGGAAGATGCTCAGACGGCTATTGAAGAACTCAATGG 254 0.4606 MVVPPSLLDFTKEMIAKSDDKTVLATYLLREIEEDSHLLALFKPIGDVSSAKLAIAPKTGTSGAYGFVTFVTKEDAQTAIEELNG 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme175363g00001 85 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 19 85 - -
Trme175363g00001 85 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 85 IPR000504 GO:0003723
Trme175363g00001 85 SUPERFAMILY RNA-binding domain, RBD 35 85 IPR035979 GO:0003676
Trme175363g00001 85 Gene3D - 11 85 IPR012677 -
Trme175363g00001 85 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 85 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme175363g00001 Trme-Chr175363 131 384 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme175363g00001 3 85 Eukaryotic Initiation Factors Gene Family AT5G06000 39.326 8.10e-13 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme175363g00001 K13091 - tpra:123898674 117.472