Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme17527g00001 | ATAGTTGAGCCAATAAAATCTGGGATTAGAGATCCAAGACTGGGGGTTGGTAAACAAGAAGAAGATGATTTTTTCACTGCAGAAGAAAATGTCCAGCGAAAAAAACTTGATATTGAGTTGGAGGAGACAGAAGAAAACGTGAGGAAGCGGGAGAAGGCAGCATATAACATATATGCATGCCTTTTTACCGGATTGGTGTTAGCTGAACGTGAGCAAAAAATTCAAACTGAGGTGAAAGAGATCCGGAAGGTGTTCTATTGTGAGCTCTGCAACAAGCAATACAAATTGGCAATGGAATTTGAAGCACACTTGAGCTCTTATGATCACAATCACAGGAAGCGTTTCAAACAAATGAAGGAAATGCATGGTAGCAGTAGCCGGGATGATAGGCAAAAGCGAGAGCAGCAGCGTCAAGAGAAAGAATTGGCCAAGTTT | 435 | 0.4161 | IVEPIKSGIRDPRLGVGKQEEDDFFTAEENVQRKKLDIELEETEENVRKREKAAYNIYACLFTGLVLAEREQKIQTEVKEIRKVFYCELCNKQYKLAMEFEAHLSSYDHNHRKRFKQMKEMHGSSSRDDRQKREQQRQEKELAKF | 145 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme17527g00001 | 145 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 87 | 109 | IPR013087 | - | |
| Trme17527g00001 | 145 | PANTHER | FINGER DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G04180)-RELATED | 1 | 145 | - | - | |
| Trme17527g00001 | 145 | SUPERFAMILY | beta-beta-alpha zinc fingers | 83 | 119 | IPR036236 | - | |
| Trme17527g00001 | 145 | Coils | Coil | 26 | 53 | - | - | |
| Trme17527g00001 | 145 | MobiDBLite | consensus disorder prediction | 116 | 145 | - | - | |
| Trme17527g00001 | 145 | Pfam | Zinc-finger double-stranded RNA-binding | 85 | 112 | IPR022755 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme17527g00001 | 1 | 145 | C2H2 Transcription Factor Family | AT5G26610 | 72.414 | 2.36e-65 | 199 |