Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme175206g00001 ATGATGTTCACTATGGAATCTCAGAAGTCAGTGCCTGCTCCTTTCTTGACAAAGACATACCAACTTGTTGATGATCCTCTCACTGACCACATTGTATCTTGGAGTGATGATGAAACTACATTTGTTGTTTGGAGACCTCCTGAGTTTGCTAGAGATCTTCTTCCCAATTTTTTCAAGCANNNNNNNTTCTCAAGCTTTGTTAGGCAACTAAATACCTATGTGAGAATCTTTAAATTCTAA 240 0.3667 MMFTMESQKSVPAPFLTKTYQLVDDPLTDHIVSWSDDETTFVVWRPPEFARDLLPNFFKXXXFSSFVRQLNTYVRIFKF 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme175206g00001 79 FunFam Heat stress transcription factor B-4 7 78 - -
Trme175206g00001 79 Pfam HSF-type DNA-binding 15 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trme175206g00001 79 Gene3D - 6 78 IPR036388 -
Trme175206g00001 79 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trme175206g00001 79 PRINTS Heat shock factor (HSF) domain signature 15 38 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trme175206g00001 79 PRINTS Heat shock factor (HSF) domain signature 53 65 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trme175206g00001 79 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 6 73 IPR027725 -
Trme175206g00001 79 SMART hsfneu3 11 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trme175206g00001 79 SUPERFAMILY "Winged helix" DNA-binding domain 12 74 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme175206g00001 Trme-Chr175206 42 281 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme175206g00001 1 73 HSF AT1G46264 78.378 7.87e-37 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Trme175206g00001 HSF_DNA-bind 2.4e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme175206g00001 K09419 - pop:7454879 131.339