Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme17519g00001 ATGTTAGTTAATCAGGTGAATCTGCTTCAAAGAAAATTTGCATACTGCAGTCCAAGGCTAGTGGCGAGACATGATCTGAAATTTGCATTAAAGCTTGCAAAAGATGCAATTGTTTCTCAGTCCACGAGGCCTGCTGAATCTAGCAGCGTAAAGAGTCTGAAAGAAACTTGTGTCATTTGTTTGGAGGATACCGATCATAGTCAATTTTTTTCAGTTGATGGTTGTCAACACAGGTATTGCTTTTCTTGCATGAAGCAACATGTGGAGGTGAAGTTGCTCCATGGAATGGTGCCAATATGTCCTCATGAGGGATGCAAGAATGAACTTCTAGTTGACAGTTGTCGGAAATTCTTGACTTCTAAATTAGTTGAAACTATGCAGCAACGAAAAGTGGAAGCTTCAATTCCGCATACTGAGAAAATTTACTGTCCTTATCCAAGATGTTCTGCATTAATGTCAAAAAGTGAAGTTTTAAACTACTCCAAAAGTCTTATGGGCTCCGAACATTCATTACCCAAGAAATGCGTAAAATGTCATGGTCTTTTCTGTTTCGGCTGCAAGGTTCCTTGGCACAGTGGTATGACATGTTATACTTACAAAAGGTTGAATCCTAACCCTCCAGCAGATGATGTGAAGTTGAAGTTTTTGGCATCAAGGAGTCTTTGGAAGCAGTGCGTGAAGTGTAACCATATGATTGAACTTGCTGAAGGTTGCTACCACATGACTTGCAG 731 0.4008 MLVNQVNLLQRKFAYCSPRLVARHDLKFALKLAKDAIVSQSTRPAESSSVKSLKETCVICLEDTDHSQFFSVDGCQHRYCFSCMKQHVEVKLLHGMVPICPHEGCKNELLVDSCRKFLTSKLVETMQQRKVEASIPHTEKIYCPYPRCSALMSKSEVLNYSKSLMGSEHSLPKKCVKCHGLFCFGCKVPWHSGMTCYTYKRLNPNPPADDVKLKFLASRSLWKQCVKCNHMIELAEGCYHMTC 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme17519g00001 243 Gene3D - 194 243 - -
Trme17519g00001 243 ProSiteProfiles Zinc finger RING-type profile. 57 101 IPR001841 -
Trme17519g00001 243 Pfam IBR domain, a half RING-finger domain 126 196 IPR002867 GO:0008270
Trme17519g00001 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 51 137 IPR013083 -
Trme17519g00001 243 ProSiteProfiles TRIAD supradomain profile. 53 243 IPR044066 -
Trme17519g00001 243 Pfam Zinc finger, C3HC4 type (RING finger) 57 101 IPR018957 GO:0046872
Trme17519g00001 243 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 42 243 IPR031127 GO:0004842|GO:0016567
Trme17519g00001 243 SUPERFAMILY RING/U-box 55 136 - -
Trme17519g00001 243 CDD BRcat_RBR_unk 138 196 - -
Trme17519g00001 243 SUPERFAMILY RING/U-box 137 201 - -
Trme17519g00001 243 FunFam RBR-type E3 ubiquitin transferase 52 137 - -
Trme17519g00001 243 SUPERFAMILY RING/U-box 210 243 - -
Trme17519g00001 243 ProSitePatterns Zinc finger RING-type signature. 75 84 IPR017907 -
Trme17519g00001 243 SMART ibrneu5 124 196 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme17519g00001 Trme-Chr17519 11 741 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme17519g00001 2 243 C3H Transcription Factor Family AT2G19610 36.327 5.82e-44 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme17519g00001 - - ahf:112736554 429.483