Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme175069g00001 ATGATGAACAGAAAGAAGATTCTGGAGATTAAGGAGTTTCTAGAAGATCCTCGCCAGTCTGAAGAATCTTTGATGGAGTTGCTGCAAAATCTGGTGGATATTGATATTACATTCCAAGAGTTGAAAGAAACTGATATCGGGAGGAACGTCAATCAGTTGCGAAAACATCCATCGAGCCA 179 0.4022 MMNRKKILEIKEFLEDPRQSEESLMELLQNLVDIDITFQELKETDIGRNVNQLRKHPSS 59
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme175069g00001 59 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 2 59 IPR035441 -
Trme175069g00001 59 Pfam TFIIS helical bundle-like domain 27 58 IPR017923 -
Trme175069g00001 59 ProSiteProfiles TFIIS N-terminal domain profile. 5 59 IPR017923 -
Trme175069g00001 59 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 2 58 IPR035441 -
Trme175069g00001 59 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 4 59 IPR044790 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme175069g00001 Trme-Chr175069 1 400 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Trme175069g00001 Med26 3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme175069g00001 - - vvo:131598346 98.5969