Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme17505g00001 GCTATTAAGGGGCCTAAAGCTGCACAATTGACAATGTTTTATAACGGTCAAGTGATTGTATTCGACGATTTTCCTGCTGATAAAGCCCATGAACTTATGGCTTTTGCTAACAAAGGAATTTCCCAAACTCAAAACAATTCTGTGTACACTTACACACAAAGCCAGCCTTCATTTCCGCCTAATTTGGTCCGAGCTTCGGTTGATTCAACCGCTCCAGTTACTACTATGAACATCATCCCTAATACTTCCACCGGTACTGGCCCTCAAGTGCTTTCCAGACCTAACGTTTGCGATCTTCCAATTATGAGGAAAGCTTCGCTTCATCGGTTTCTTGAGAAGAGAAAGGATAGAGTTGCTGCTAAAGCACCATATCAAGTTAATAAACCAGCTGAATCCATGTCATGGCTTGTGGGTGCCAAATCAACTCAAATCTGA 435 0.423 AIKGPKAAQLTMFYNGQVIVFDDFPADKAHELMAFANKGISQTQNNSVYTYTQSQPSFPPNLVRASVDSTAPVTTMNIIPNTSTGTGPQVLSRPNVCDLPIMRKASLHRFLEKRKDRVAAKAPYQVNKPAESMSWLVGAKSTQI 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme17505g00001 144 Pfam tify domain 5 37 IPR010399 -
Trme17505g00001 144 Pfam Jas motif 100 125 IPR018467 -
Trme17505g00001 144 ProSiteProfiles Tify domain profile. 3 38 IPR010399 -
Trme17505g00001 144 SMART tify_2 3 38 IPR010399 -
Trme17505g00001 144 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 4 131 IPR040390 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme17505g00001 6 136 Tify Gene Family AT1G19180 42.254 3.35e-24 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Trme17505g00001 tify 9.7e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme17505g00001 K13464 - gmx:100801449 184.111