Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme175041g00001 GGTGCTGTGATTGCTGTTAAACAGCTCTCTTCCAAATCAAAGCAAGGAAACCGTGAATTCGTTAATGAAATAGGTATGATATCGGCTTTGCAGCATCCGAATCTTGTGAAGCTTTATGGATGTTGCATTGAAGGAAACCAATTGCTGCTTGTATANGAGTACATGGAGAACAATAGTCTTGCTCGCGCTCTTTTCGGTAAACCGGAACAGAAGTTGAACTTGGACTGGAGCACGAGAATGAAGATATGTGTCGGGATAGCAAGAGGTTTAGCGTATCTTCATGAGGAATCAAGGTTGAAGATAGTTCACAGGGATATTAAGGCGACCAATGTCTTACTTGATAA 344 0.4157 GAVIAVKQLSSKSKQGNREFVNEIGMISALQHPNLVKLYGCCIEGNQLLLVXEYMENNSLARALFGKPEQKLNLDWSTRMKICVGIARGLAYLHEESRLKIVHRDIKATNVLLD 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme175041g00001 114 ProSiteProfiles Protein kinase domain profile. 1 114 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme175041g00001 114 Pfam Protein tyrosine and serine/threonine kinase 4 114 IPR001245 GO:0004672|GO:0006468
Trme175041g00001 114 SUPERFAMILY Protein kinase-like (PK-like) 2 114 IPR011009 -
Trme175041g00001 114 ProSitePatterns Serine/Threonine protein kinases active-site signature. 101 113 IPR008271 GO:0004672|GO:0006468
Trme175041g00001 114 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 1 114 - -
Trme175041g00001 114 FunFam Os07g0541700 protein 55 114 - -
Trme175041g00001 114 Gene3D Transferase(Phosphotransferase) domain 1 56 114 - -
Trme175041g00001 114 Gene3D Phosphorylase Kinase; domain 1 1 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme175041g00001 Trme-Chr175041 60 488 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme175041g00001 1 114 Receptor kinase-like Gene Family AT1G53430 86.842 2.87e-65 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trme175041g00001 PK_Tyr_Ser-Thr 1.9e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme175041g00001 - - psat:127094156 224.172