Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme17497g00001 AATGGAATAAGTGTCCTTGTTCAGCGAAGCCTAGTAACTATTGATGATAAAAACAAACTTAGAATGCATGATTTGTTGCGGGATATGGGAAGAGAAATCGTTTGTAATATACCACGAAAGGAGCCCGAGGAGCGTAGCAGGTTGTGGTTTCATGAGGATGTTGAGGGTGTATTAGAAGGACAAACTGGAACAAAAGCTGTTGAGGGATTGGCTTTGAAGTTGCCAAGAGATAGTGTAAAATGTTACAGTACTAAAACATTTGAGAAGATGAAGAATCTCAGATTGCTTCAACTTGCTGGTGTAACCCTTGATGGGGACTTTGACTATCTTTCAAGAAATTTGAGATGGCTTTCTTGGAATGGATTTCCTCTATCATACATTCCTACAGATTTTTATCACGGAAATTTAGTTTCCATCGAGTTAGAAAATAGCAATATCAAAGTTTTGTGGAAAGAGCCCCAGTTCGGAAGAACTGTCATCTATTATTTCCAACCACCTTTCAAGGCTTCGAAGTCTATGGGTAGAGTGTGA 531 0.3898 NGISVLVQRSLVTIDDKNKLRMHDLLRDMGREIVCNIPRKEPEERSRLWFHEDVEGVLEGQTGTKAVEGLALKLPRDSVKCYSTKTFEKMKNLRLLQLAGVTLDGDFDYLSRNLRWLSWNGFPLSYIPTDFYHGNLVSIELENSNIKVLWKEPQFGRTVIYYFQPPFKASKSMGRV 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme17497g00001 176 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 2 149 IPR044974 GO:0006952
Trme17497g00001 176 Gene3D Ribonuclease Inhibitor 65 156 IPR032675 -
Trme17497g00001 176 SUPERFAMILY L domain-like 71 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme17497g00001 Trme-Chr17497 94 1413 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme17497g00001 2 151 WRKY Transcription Factor Family AT4G12020 38.509 2.52e-22 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme17497g00001 - - tpra:123906985 263.848