Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme17449g00001 ATGCCAGCATTAATTTGGGATCAAAAGGACAAAATGTATTCAATGTTTTTATCTAGCAATGGGCTGGTTGAAGATCCAGTGGCTATTGAGAAAGAAAGGGCCATGATAAACCCTTGGACTGCAGAAGAGCAAGAGATTTTCTTGGCGAAATTTGCTGCCTATGGAAAAGATTTTCGAAAAATTGCTACTTTCCTTAACCACAAGACAACGGCTGACTGTGTTGAATTCTACTACAAAAATCACAAGTCTGATTGTTTTGAGAAAATTAAGAAAAAAGATGATGACAGGCTAGGGAAATTTTTCAAAGCCAAAACTGACTTGATGGCATCAGGTGTAAAATGTAACTCTGGAGTGAATACTTCTTCACTTGATATTTTGAGTGAAGCTTCTTCAGTGATGGCAGATGACATTGCACGTGATCGGAAAATGCGTTCAGGAAGTTCCTTATGGAGGGGATATAATAATAATAAGGCCATGTCAAGGGGTGACAATATCATTACAGAGAGGCCGGACAGTTTTGACGTTCTTCAAGATGAAAGAGAGACTGTTGCAGCTGATGTATTGGCTAGTATATGTGGTTGTGTTTTATCCGAGGCAACGAGNNNNNTNNNNNNNNNNTNNNNNNNNNNTGTGAAAGGTAAAAGGGTCGTCAAGAAGTGCGTGAAAGCGAAGCCTCTATCCAAAAAACCTCCAATGCCAGACATTACTCAAAATATTGATCATGAAACTTGTTCCGACGAGAGCTGTGGTGAAATGGAACTTACTGATTGGTCAGATGTGGAGAAGGCAGCCTTTCTTCATGCTGTATCATTGTTTGGTAAGGATTTTGCAATGATTGCACAGCGTGTCAGAACAAGATCCCAATACCAGTGCAAAGTTTTTTTTAGCAAGACTCAGAAACGTCTTAGATTGAATCGCATGGGTCACAGACCTGAAAATG 940 0.3894 MPALIWDQKDKMYSMFLSSNGLVEDPVAIEKERAMINPWTAEEQEIFLAKFAAYGKDFRKIATFLNHKTTADCVEFYYKNHKSDCFEKIKKKDDDRLGKFFKAKTDLMASGVKCNSGVNTSSLDILSEASSVMADDIARDRKMRSGSSLWRGYNNNKAMSRGDNIITERPDSFDVLQDERETVAADVLASICGCVLSEATXXXXXXXXXXVKGKRVVKKCVKAKPLSKKPPMPDITQNIDHETCSDESCGEMELTDWSDVEKAAFLHAVSLFGKDFAMIAQRVRTRSQYQCKVFFSKTQKRLRLNRMGHRPEN 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme17449g00001 313 ProSiteProfiles SANT domain profile. 34 85 IPR017884 -
Trme17449g00001 313 Gene3D - 209 312 - -
Trme17449g00001 313 FunFam Metastasis-associated 1 family, member 3 34 95 - -
Trme17449g00001 313 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 313 - -
Trme17449g00001 313 SUPERFAMILY Homeodomain-like 22 82 IPR009057 -
Trme17449g00001 313 Pfam Myb-like DNA-binding domain 256 296 IPR001005 -
Trme17449g00001 313 Pfam Myb-like DNA-binding domain 37 79 IPR001005 -
Trme17449g00001 313 CDD SANT 257 295 IPR001005 -
Trme17449g00001 313 ProSiteProfiles SANT domain profile. 252 303 IPR017884 -
Trme17449g00001 313 Gene3D - 15 87 - -
Trme17449g00001 313 SMART sant 35 83 IPR001005 -
Trme17449g00001 313 SMART sant 253 301 IPR001005 -
Trme17449g00001 313 SUPERFAMILY Homeodomain-like 255 303 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme17449g00001 Trme-Chr17449 1 940 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trme17449g00001 Myb_DNA-binding 1.7e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme17449g00001 - - tpra:123910846 574.704