Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme17414g00001 ATGGATATTTACAGGAAAAGGCTTTTTCAGATGATAAATGATCTGCCAACTATCTTTGAGCTTGCAACAGGAAATGCTAAGCAATCGAAGGACCAACCAACTGCTCACAACAATGGTAGCAATAGCAAATACAAATCAAGTGGAAAGTCTCGCCAGTCTGAGCCTCAGGCCAAGGGTGTGAAGATGTCGGCACCACCCAAAGAAGAGGATGACAGTGGGGAAGAAGAAGAAGATGATGATGAACAAGGTGCAACCTGTGGTGCTTGTGGTGATAATTATGGCACTGATGAATTTTGGATCTGTTGTGATATGTGCGAGAAATGGTTTCATGGTAAATGTGTTAAAATTACTCCTGCTAAGGCCGAACACATCAAGCAATACAAGTGCCCCGGCTGCA 397 0.4358 MDIYRKRLFQMINDLPTIFELATGNAKQSKDQPTAHNNGSNSKYKSSGKSRQSEPQAKGVKMSAPPKEEDDSGEEEEDDDEQGATCGACGDNYGTDEFWICCDMCEKWFHGKCVKITPAKAEHIKQYKCPGC 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme17414g00001 132 ProSiteProfiles Zinc finger PHD-type profile. 83 132 IPR019787 -
Trme17414g00001 132 CDD PHD_AL_plant 86 132 IPR044104 -
Trme17414g00001 132 MobiDBLite consensus disorder prediction 69 84 - -
Trme17414g00001 132 FunFam PHD finger alfin-like protein 78 132 - -
Trme17414g00001 132 SMART PHD_3 85 132 IPR001965 -
Trme17414g00001 132 Pfam PHD-finger 86 132 IPR019787 -
Trme17414g00001 132 ProSitePatterns Zinc finger PHD-type signature. 86 132 IPR019786 -
Trme17414g00001 132 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 132 IPR013083 -
Trme17414g00001 132 MobiDBLite consensus disorder prediction 24 57 - -
Trme17414g00001 132 SUPERFAMILY FYVE/PHD zinc finger 74 132 IPR011011 -
Trme17414g00001 132 MobiDBLite consensus disorder prediction 24 86 - -
Trme17414g00001 132 PANTHER CPG BINDING PROTEIN 5 132 IPR045104 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme17414g00001 Trme-Chr17414 721 1215 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme17414g00001 5 132 Alfin-like Transcription Factor Family AT1G14510 72.656 5.23e-54 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Trme17414g00001 PHD 1.3e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme17414g00001 K26274 - gmx:100807826 228.024