Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme173785g00001 TCACACATCATTGTTCAAGCTCCTAACACATCGCAAAATAACGACAACAATGCTCCGGCGAGTGAAGCCACCGAACAAAGACTTCAATGCTGCGTTAAGGGGCTCGTTCGTGTGTCAGATCTCGATTTACCAGGTCAGAGAAAATTTCGTGAAATTGTTAGAAGTATTAGAATGGTGTACGATTCCATTCGTGTTATGGCCATGGAGGAAGAAGATAAGGAAGTTGATGTCTGTAGCGAAAGAATTAATCTAAGAGTGTCTGCTATGATGAGGCGTCGTGGGTTGGGGCTAAATCGTGACAAGAAAATCATAGGCACGATCCCTGGTGTTTGTATTGGGGACGTGTTTCTCAATAAAATGGAATTGGTTGTGGTTGGTTTACATGGCCAACCACAAGCCGGAATTGATTATTTACCCGATATTATGAGTTCGAATGGCGAACCGATTGCAACAAGTGTGATTGTTTCGGGTGGATATGATGATAGTGTT 489 0.4294 SHIIVQAPNTSQNNDNNAPASEATEQRLQCCVKGLVRVSDLDLPGQRKFREIVRSIRMVYDSIRVMAMEEEDKEVDVCSERINLRVSAMMRRRGLGLNRDKKIIGTIPGVCIGDVFLNKMELVVVGLHGQPQAGIDYLPDIMSSNGEPIATSVIVSGGYDDSV 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme173785g00001 163 SMART G9a_1 100 162 IPR003105 -
Trme173785g00001 163 MobiDBLite consensus disorder prediction 1 22 - -
Trme173785g00001 163 Pfam SAD/SRA domain 104 162 IPR003105 -
Trme173785g00001 163 Gene3D - 87 163 IPR036987 -
Trme173785g00001 163 ProSiteProfiles YDG domain profile. 105 163 IPR003105 -
Trme173785g00001 163 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 13 161 - -
Trme173785g00001 163 SUPERFAMILY PUA domain-like 96 162 IPR015947 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme173785g00001 Trme-Chr173785 3 491 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme173785g00001 50 161 Su(var)3-9 homologs AT5G04940 41.228 9.68e-18 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme173785g00001 K11420 - tpra:123885822 183.726