Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme173634g00001 ATGCGGTTTACAATTACTGGTTCTGGCATCTTCAATTCAGTGCTGATAAGTAATGTGGGTGGCATAGGAGACATTGTTGGTGTCAAAGTTAAAGGTTCAAGAACTGGTTGGATTTCTATGGGTCGGAATTGGGGTCAAAACTGGCATGTAAATGCTTTGCTACAAAACCAACCTCTTTCATTTGAG 186 0.4086 MRFTITGSGIFNSVLISNVGGIGDIVGVKVKGSRTGWISMGRNWGQNWHVNALLQNQPLSFE 62
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme173634g00001 62 Pfam Expansin C-terminal domain 1 61 IPR007117 -
Trme173634g00001 62 PRINTS Expansin signature 11 32 IPR002963 GO:0009664
Trme173634g00001 62 PRINTS Expansin signature 46 62 IPR002963 GO:0009664
Trme173634g00001 62 Gene3D - 2 62 IPR036749 -
Trme173634g00001 62 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 10 62 IPR007117 -
Trme173634g00001 62 SUPERFAMILY PHL pollen allergen 1 62 IPR036749 -
Trme173634g00001 62 PANTHER EXPANSIN-A15 1 62 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme173634g00001 Trme-Chr173634 50 235 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme173634g00001 1 62 Expansin Gene Family AT3G03220 74.194 2.09e-28 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme173634g00001 - - tpra:123916217 126.331