Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme17339g00001 GGATATGGACCTGTTTTCAAAGGTGTGCTTGATAACCATGTTGTTGCAGTTAAGGCCTTAAGACCAGACATAACTCAAGGAGAGAAACAATTTCATCAAGAGGTCCTTGTTTTAGGCTCCATTAGACACCCCAACATTGTAGTACTTTTAGGCGCATGTCCGGAGTATGGATGCCTCGTATACGAGTACCTAGAGAACGGAAGCTTAGAAGATCGCCTTTTTTGTAAAGATAACACACCGCCAATTCCATGGAAGACTCGTTTCAAAATAGCATCAGAGATTGCCACAGGTCTTCTTTTCCTTCACCAGACAAAACCAGAACCGGTTGTGCATCGCGATCTAAAGCCAGCAAACATTCTGTTAGACAGAAACAAAGTGAGCAAGATTACTGATTATGGTTTGGCAAGGCTTGTTCCACCTTCTATCGCCAACAAAACNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNTATATCGATCCGGAGTATCAACAAACGGGACTATTAGGCGTAAAATCAGACATATATTCATTAGGTGTGATGCTGTTACAGATCATTACCGGAAAGCCTCCAATTGGCGTGGCTCATCTTGTTGAGGAGGCCATTCAAAATAATACTTTTGCAGAGGTTTTAGATCCGAATGTGACCGATTGGCCGGTTGAAGAAGCTTTATCATATGCTAAAATGGCTTTGAAGTGTTGTGAGATGAGAAAAAAGGATAGACCAAATCTTGCTACTGTCATTTTGCCAGAACTGATTAGACTCAGAGATCTATAA 783 0.3946 GYGPVFKGVLDNHVVAVKALRPDITQGEKQFHQEVLVLGSIRHPNIVVLLGACPEYGCLVYEYLENGSLEDRLFCKDNTPPIPWKTRFKIASEIATGLLFLHQTKPEPVVHRDLKPANILLDRNKVSKITDYGLARLVPPSIANKTXXXXXXXXXXXXXYIDPEYQQTGLLGVKSDIYSLGVMLLQIITGKPPIGVAHLVEEAIQNNTFAEVLDPNVTDWPVEEALSYAKMALKCCEMRKKDRPNLATVILPELIRLRDL 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme17339g00001 260 PANTHER OS02G0152300 PROTEIN 1 259 - -
Trme17339g00001 260 SUPERFAMILY Protein kinase-like (PK-like) 1 250 IPR011009 -
Trme17339g00001 260 Pfam Protein kinase domain 2 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme17339g00001 260 Gene3D Transferase(Phosphotransferase) domain 1 65 259 - -
Trme17339g00001 260 FunFam Os07g0541700 protein 64 149 - -
Trme17339g00001 260 PIRSF ILK 3 259 - -
Trme17339g00001 260 ProSiteProfiles Protein kinase domain profile. 1 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme17339g00001 260 SMART serkin_6 1 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme17339g00001 260 Gene3D Phosphorylase Kinase; domain 1 1 64 - -
Trme17339g00001 260 ProSitePatterns Serine/Threonine protein kinases active-site signature. 109 121 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme17339g00001 Trme-Chr17339 181 1051 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme17339g00001 1 260 Receptor kinase-like Gene Family AT1G17540 64.231 8.04e-127 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Trme17339g00001 Pkinase 1.4e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme17339g00001 - - gmx:100814365 422.55