Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme17309g00001 TCAAGTGAGTTGCAACCAGAAGAAAATAAAGCTTCTGCGGAGAAAAATCCGAAAAGAAAGCTCAAAACACCTGCACAGCTTAAGGGATTGGAGAAATTTTATACTGAGCACAAATATCCGACAGAGGAATTGAAATTAGCGATTGCTGAGGAGTTAGAGTTGACAGAAAAGCAAGTATCTGGATGGTTTTGCCACCGAAGATTAAAAGATAAAAGATTGTTGAAAGAAGAAGCAAATGCTGCTGCTAATGGACGACAAGATCGTTCAAGCGGTGTCATCCAGGATCGTGGCAGTGGACTCGGGCAAGATTCATGTGGAAGCAGTAAACATGGTGATTATAAGTATCTCGATCCTAAAGAGGTTGAGAGCCATGGCCTCTACAATCGTGATTTGTCTGTTGCAGATATGACCTATGGACGTAGGAACCAGTTTTCTGAAAATGTTAGTGGAATGGACGATACATCATCTGAGAGTAGCTCTTTTTTGCAAGATCGGCTGTATCCTCAAGGCCAAGATCCATATGAGACCGAGCCATCTAGATATCTAGCACATAGTAAAGCTCTTCCGCCCTTAAATCCCAAGGGTACAGTTAACATGGGATATAAACCATCGGGATATTTGAAAGTGAAGGGTGAGATAGAACATGCTGCTATAACCGCTGTTAAGAAGCAATTAGGAAGGAACTATCGGGAAGATGGTCCACTACTTGGTGTAGAATTTGATCCCCTTCCTCCAGGGGCATTTGAATGCCAAACTGAAGATCCAGTTCATGCTGACTTATTAGGATAA 789 0.4221 SSELQPEENKASAEKNPKRKLKTPAQLKGLEKFYTEHKYPTEELKLAIAEELELTEKQVSGWFCHRRLKDKRLLKEEANAAANGRQDRSSGVIQDRGSGLGQDSCGSSKHGDYKYLDPKEVESHGLYNRDLSVADMTYGRRNQFSENVSGMDDTSSESSSFLQDRLYPQGQDPYETEPSRYLAHSKALPPLNPKGTVNMGYKPSGYLKVKGEIEHAAITAVKKQLGRNYREDGPLLGVEFDPLPPGAFECQTEDPVHADLLG 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme17309g00001 262 MobiDBLite consensus disorder prediction 79 111 - -
Trme17309g00001 262 Pfam Homeodomain 18 72 IPR001356 GO:0003677
Trme17309g00001 262 CDD homeodomain 18 72 IPR001356 GO:0003677
Trme17309g00001 262 ProSiteProfiles 'Homeobox' domain profile. 13 73 IPR001356 GO:0003677
Trme17309g00001 262 MobiDBLite consensus disorder prediction 8 24 - -
Trme17309g00001 262 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 257 - -
Trme17309g00001 262 SMART HOX_1 15 77 IPR001356 GO:0003677
Trme17309g00001 262 SUPERFAMILY Homeodomain-like 13 75 IPR009057 -
Trme17309g00001 262 Gene3D - 7 91 - -
Trme17309g00001 262 MobiDBLite consensus disorder prediction 83 105 - -
Trme17309g00001 262 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme17309g00001 Trme-Chr17309 345 1327 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme17309g00001 1 257 Homeobox Transcription Factor Family AT4G03250 56.977 2.84e-79 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Trme17309g00001 Homeodomain 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme17309g00001 - - gmx:100803515 414.461