Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trme172g00001 ATGTATTGGGCGTTTAACATAAATCAGTTGATAGAGACATTACATGTACCAGCATATATATCAGCTCAGCTCCTGGGAGCTACACTTGCTAGTGGAACTCTAAAACTAATTTTCAGTGGCAAACATGATCAGTTTTCAGGAAATCTTGCAACTGGGTCTAATCTTCAAGCTTTTGTACTTGAATTCATAGTCACATTTTTCCTTATGTTTACTATTTCTGGAGTTGCCACTGATAATAGAGCGATTGGTGAATTGGCTGGAATTGCAATTGGGTCTACATTATTGGTTAATGTGCTCATTTCAGGACCGATAACAGGAGCTTCGATGAACCCAGTTAGAAGCCTAGGACCTGCTTTTGTACACAATGAATACAGAGGAATATGGATATTTATATTGTCACCAATTTTGGGGGCCGTGGCCGGAGCATGGGTTTATAACACTGTTAGATACACCAACAAGTCAGTTCGTGAGATCACCAAGAGTGCTTCCTTCCTCAAAGAAGCGGGACGTGGTGGGCGCCAAACAGTTTAA 531 0.4105 MYWAFNINQLIETLHVPAYISAQLLGATLASGTLKLIFSGKHDQFSGNLATGSNLQAFVLEFIVTFFLMFTISGVATDNRAIGELAGIAIGSTLLVNVLISGPITGASMNPVRSLGPAFVHNEYRGIWIFILSPILGAVAGAWVYNTVRYTNKSVREITKSASFLKEAGRGGRQTV 176
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trme172g00001 176 PANTHER AQUAPORIN NIP2-1 4 165 IPR034294 -
Trme172g00001 176 Pfam Major intrinsic protein 6 145 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trme172g00001 176 SUPERFAMILY Aquaporin-like 5 158 IPR023271 -
Trme172g00001 176 PRINTS Major intrinsic protein family signature 15 34 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trme172g00001 176 PRINTS Major intrinsic protein family signature 60 78 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trme172g00001 176 PRINTS Major intrinsic protein family signature 128 148 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trme172g00001 176 PRINTS Major intrinsic protein family signature 91 113 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trme172g00001 176 Gene3D Glycerol uptake facilitator protein. 2 162 IPR023271 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trme172g00001 Trme-Chr172 3662 4622 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme172g00001 15 166 Major Intrinsic Protein MIP AT5G37810 56.579 1.79e-58 182
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme172g00001 K09874 - gmx:100813448 256.529