Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trme172966g00001 | ATGAGGTGGAGGAGTGGAGGGTCAGAGAAGAGCAAGGTGAAAGTGAGGAGGAAGCTTAGAGAACCAAGGTTTTGTTTCCAAACAAGAAGTGATGTGGATGTGCTTGATGATGGTTACAAATGGAGGAAGTATGGTCAGAAAGTTGTAAAGAATAGCCTTCATCCAAG | 167 | 0.4371 | MRWRSGGSEKSKVKVRRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKVVKNSLHP | 55 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trme172966g00001 | 55 | Pfam | WRKY DNA -binding domain | 36 | 55 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Trme172966g00001 | 55 | Gene3D | WRKY domain | 22 | 55 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Trme172966g00001 | 55 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 11 | 55 | IPR044810 | GO:0003700 | |
Trme172966g00001 | 55 | ProSiteProfiles | WRKY domain profile. | 30 | 55 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Trme172966g00001 | 55 | SUPERFAMILY | WRKY DNA-binding domain | 27 | 55 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trme172966g00001 | Trme-Chr172966 | 304 | 470 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trme172966g00001 | 3 | 55 | WRKY Transcription Factor Family | AT2G44745 | 83.929 | 2.90e-28 | 98.2 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | WRKY | Trme172966g00001 | WRKY | 1.4e-06 | CL0274 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trme172966g00001 | - | - | adu:107464355 | 112.079 |