Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme172966g00001 ATGAGGTGGAGGAGTGGAGGGTCAGAGAAGAGCAAGGTGAAAGTGAGGAGGAAGCTTAGAGAACCAAGGTTTTGTTTCCAAACAAGAAGTGATGTGGATGTGCTTGATGATGGTTACAAATGGAGGAAGTATGGTCAGAAAGTTGTAAAGAATAGCCTTCATCCAAG 167 0.4371 MRWRSGGSEKSKVKVRRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKVVKNSLHP 55
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme172966g00001 55 Pfam WRKY DNA -binding domain 36 55 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme172966g00001 55 Gene3D WRKY domain 22 55 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trme172966g00001 55 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 11 55 IPR044810 GO:0003700
Trme172966g00001 55 ProSiteProfiles WRKY domain profile. 30 55 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme172966g00001 55 SUPERFAMILY WRKY DNA-binding domain 27 55 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme172966g00001 Trme-Chr172966 304 470 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme172966g00001 3 55 WRKY Transcription Factor Family AT2G44745 83.929 2.90e-28 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trme172966g00001 WRKY 1.4e-06 CL0274