Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme172913g00001 ATGGCAGCTTGTGTATTCACCGTTTCACAAGACGGTTCNGGAGATTTTCAAACGGTGCAAGAAGCAATCGACGCCGTACCTTTCGGTAACACACGACGGACTGTGATTCGGGTTTCTCCGGGAATCTACCGGCAACCGGTTTACGTTGCTAAAACCAAGAATTTCATCACTCTTGCTGGGTTGGGTCCTGAGGATACTGTGCTTACTTGGAATAACACTGCCAC 224 0.4866 MAACVFTVSQDGSGDFQTVQEAIDAVPFGNTRRTVIRVSPGIYRQPVYVAKTKNFITLAGLGPEDTVLTWNNTAT 75
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme172913g00001 75 Pfam Pectinesterase 7 71 IPR000070 GO:0030599|GO:0042545
Trme172913g00001 75 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 5 74 - -
Trme172913g00001 75 Gene3D - 2 75 IPR012334 -
Trme172913g00001 75 SUPERFAMILY Pectin lyase-like 2 73 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme172913g00001 Trme-Chr172913 1 224 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme172913g00001 6 73 Carbohydrate Esterase AT2G47030 44.118 3.89e-15 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme172913g00001 K01051 - gmx:100786786 138.272