Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme17290g00001 CTTGGAAAAGGTGGATTTGGGACTGTTTACAGAGGTAGACTCCCCAATGGTCAAGAGATTGGTGTCAAAAGGTTGTCAAGGGATTCTGGTCAAGGAGATTTAGAATTTAAGAACGAAGTGCTTTTAGTGGCTAAGCTTCAACACCGAAATTTAGTCAGACTACTCGGTTTTTGTATCGAAGGAAGAGAAAGACTACTTGTATATGAATTTGTTCATAATAAGAGTCTTGATTACTTCATATTTGATCAAGCTAAGAGAGCCGAATTAAATTGGGAAAGGCGCTATAAAATCATTTTAGGTATTGCTCGAGGAATTATTTACCTTCATGAGGATTCTCGGCTACGCATTATCCATCGCGATCTTAAAGCAAGCAACATTCTCTTAGATGAAGAAATGAATCCAAAGATAGCAGATTTTGGCATGGCTAGACTATTTGATGTGGACCAAACTCAGGAAAATACAAATAGAATTGTGGGAACCTATGGATATATGGCACCTGAGTATGCAATGCATGGACAATTTTCAGTGAAGTCAGATGTATTCAGTTTTGGCGTATTGATTCTTGAGATTATAAGTGGCCANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNAAGAGTATCTACTAAGCTTTGTATGGAGAAACTGGAGGGACGGATCACCGACAAATATTATAGATCCCACATTAAACAATGATTCAGTGAATGAAATAATGAGATGCATCCACATTGGACTACTATGTGTTCAAGAAAATGCAGCTAGTAGGCCAACTATGGMTTCTGTTGTACTAATGCTTAATAGTCATTCTCTCACTCTTTCAAGACCTTTAGAACCTGCGTTTTATGTAGAAAGTGGAGTTGAAGACTTTCAAGATTATACGACGAAATCATCAGAGAATAATTCAGTTCAAGGATCAGTAATTGAAGCTTCAATTACAGAGCCATATCCTCGCTAG 954 0.3627 LGKGGFGTVYRGRLPNGQEIGVKRLSRDSGQGDLEFKNEVLLVAKLQHRNLVRLLGFCIEGRERLLVYEFVHNKSLDYFIFDQAKRAELNWERRYKIILGIARGIIYLHEDSRLRIIHRDLKASNILLDEEMNPKIADFGMARLFDVDQTQENTNRIVGTYGYMAPEYAMHGQFSVKSDVFSFGVLILEIISGXXXXXXXXXXXXEYLLSFVWRNWRDGSPTNIIDPTLNNDSVNEIMRCIHIGLLCVQENAASRPTMXSVVLMLNSHSLTLSRPLEPAFYVESGVEDFQDYTTKSSENNSVQGSVIEASITEPYPR 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme17290g00001 317 FunFam Cysteine-rich receptor-like protein kinase 11 6 70 - -
Trme17290g00001 317 SUPERFAMILY Protein kinase-like (PK-like) 1 265 IPR011009 -
Trme17290g00001 317 SMART serkin_6 1 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme17290g00001 317 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 313 - -
Trme17290g00001 317 Pfam Protein tyrosine and serine/threonine kinase 1 263 IPR001245 GO:0004672|GO:0006468
Trme17290g00001 317 FunFam Cysteine-rich receptor-like protein kinase 28 71 273 - -
Trme17290g00001 317 ProSiteProfiles Protein kinase domain profile. 1 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme17290g00001 317 CDD STKc_IRAK 1 266 - -
Trme17290g00001 317 ProSitePatterns Serine/Threonine protein kinases active-site signature. 116 128 IPR008271 GO:0004672|GO:0006468
Trme17290g00001 317 Gene3D Phosphorylase Kinase; domain 1 1 71 - -
Trme17290g00001 317 Gene3D Transferase(Phosphotransferase) domain 1 72 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme17290g00001 Trme-Chr17290 1 1402 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme17290g00001 1 317 Receptor kinase-like Gene Family AT4G21410 64.486 2.62e-141 413
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trme17290g00001 PK_Tyr_Ser-Thr 3.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme17290g00001 - - gmx:100791582 464.922