Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme172816g00001 ATGGCAACAAACAGATTCATCTGTGAAATATGCAACAAAGGTTTCCAAAGAGATCAAAACCTTCAACTTCACAGAAGAGGACACAACCTTCCATGGAAGCTTAGGCAGAGATCAAACAAAGATGTTATTAAGAAGAAAGTTTACATCTGTCCAGAGAAGACTTGTGTCCACCATGACCCTTCCAGAGCACTTGGTGACCTCACAGTCCAATCCGATTGGAAAGCTCACACAAAAACATGTGGTACAAGAGAATACAAATGTGACTGTGGCACCCTCTTCTCAAG 284 0.419 MATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKDVIKKKVYICPEKTCVHHDPSRALGDLTVQSDWKAHTKTCGTREYKCDCGTLFS 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme172816g00001 94 SUPERFAMILY beta-beta-alpha zinc fingers 4 29 IPR036236 -
Trme172816g00001 94 Gene3D Classic Zinc Finger 2 29 - -
Trme172816g00001 94 FunFam Zinc finger protein MAGPIE 2 29 - -
Trme172816g00001 94 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 28 IPR013087 -
Trme172816g00001 94 Pfam Zinc-finger double-stranded RNA-binding 6 28 IPR022755 -
Trme172816g00001 94 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 69 94 IPR031140 -
Trme172816g00001 94 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme172816g00001 Trme-Chr172816 111 469 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme172816g00001 1 94 IDZ Gene Family AT5G03150 72.269 2.65e-56 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trme172816g00001 zf-C2H2_jaz 6.7e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme172816g00001 K25870 - fve:101307518 192.971