Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme172636g00001 CAACATCCTCTGCGTGGAGGACAATTGACTCCTTTTGCACACCAATTAGCTTCAAACAAGATTAGAGATGCCAATGCTGGCCCTTCATTTATCTCTCAGTCTGCCGCTGATGAAGGATCAAGAACTGGAATCAAGGGCCCTGGAATTTTAAGTTCCATAAACACAGGTGCTACTGCTACTGAGAAAATTCCGTCTGCAGTGCTGCTCGGTGGAAGCAGGCCAAAGCCTCTAAGTAATATAGTAGAATCCTCCACACCCCCAAGCAGTCAACATGGGCTAACACCTACCAGCCGCCAGATGACTATCTTTTACGGAGGTCAAGCTCATGTTTTCGATGATGTTCACCCACACAAG 354 0.4718 QHPLRGGQLTPFAHQLASNKIRDANAGPSFISQSAADEGSRTGIKGPGILSSINTGATATEKIPSAVLLGGSRPKPLSNIVESSTPPSSQHGLTPTSRQMTIFYGGQAHVFDDVHPHK 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme172636g00001 118 ProSiteProfiles Tify domain profile. 93 118 IPR010399 -
Trme172636g00001 118 MobiDBLite consensus disorder prediction 30 51 - -
Trme172636g00001 118 Pfam tify domain 95 118 IPR010399 -
Trme172636g00001 118 MobiDBLite consensus disorder prediction 68 96 - -
Trme172636g00001 118 MobiDBLite consensus disorder prediction 77 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme172636g00001 Trme-Chr172636 22 492 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme172636g00001 1 118 Tify Gene Family AT4G32570 47.500 2.15e-28 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Trme172636g00001 tify 5.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme172636g00001 - - gmx:100819293 209.534