Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme172459g00001 TTAAAGCGTTATAGAGGTTTCAAGGAGGGGCATTCAAGGATTCTTGTTGCAACAGATTTGGTTGGCAGAGGGATTGACATTGAACGTGTCAACATTGTTATAAACTATGACATGCCTGATTCTGCAGACACATACTTGCACAGGGTCCAGTCAAGGTTTGAAATAGATATAAAGCAGCTTCCTGAGCAGATTGATACCTCTACCTACA 208 0.4135 LKRYRGFKEGHSRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVQSRFEIDIKQLPEQIDTSTY 69
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme172459g00001 69 Gene3D - 1 49 IPR027417 -
Trme172459g00001 69 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 3 50 - -
Trme172459g00001 69 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 69 IPR001650 -
Trme172459g00001 69 Pfam Helicase conserved C-terminal domain 5 49 IPR001650 -
Trme172459g00001 69 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 49 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme172459g00001 Trme-Chr172459 30 494 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme172459g00001 1 69 Eukaryotic Initiation Factors Gene Family AT5G11170 63.918 4.67e-35 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme172459g00001 K12812 - boe:106326741 128.257