Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme172335g00001 ATGGGTTTGGATTCTCTGCCAACTTCCGAAGTCAGTGAGCTTTCTGGTGCTTCATTATACAGCTCCAACTCTCATGGAGCTTCCCATTATAATGAGGGTGCTCTTTGTTCCATGGATGACTTCCGTCGTGCGGATTACTTAAACACACCATTTAAGCCGGAGAAGTCTTCTTGGGATGCCATGGAATCAAGGGCACATAAAATGGATAACCGGCAAATGAAGAGATTTCAAACTGAAATGTTGCCTCCGAAGTCGGCTAAACCCATTCCAGTTACTCACAATAGATTATTGTCTCCCATCAAGAGTAATGGTTATCTGCCTCAGAAGAATGTAGTTCAGATAATGGAGGCGGCTGCTAAGATAATTGATGGAAGTCCTCAGCCATATACGAGGAATAGAATACTATCAGGGGAGTCTTCATCTGTTCCCTTGAGAATTCTTGATTTGAAAGAGAGATTGGAAGCTGCACAATATGCACCC 480 0.4333 MGLDSLPTSEVSELSGASLYSSNSHGASHYNEGALCSMDDFRRADYLNTPFKPEKSSWDAMESRAHKMDNRQMKRFQTEMLPPKSAKPIPVTHNRLLSPIKSNGYLPQKNVVQIMEAAAKIIDGSPQPYTRNRILSGESSSVPLRILDLKERLEAAQYAP 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme172335g00001 160 PANTHER PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATED 1 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme172335g00001 Trme-Chr172335 15 494 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme172335g00001 57 159 TRM (TON1 Recruiting Motif) Superfamily AT3G58650 55.660 1.78e-29 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme172335g00001 - - tpra:123890979 306.219