Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme172316g00001 AGTGTGGTGGCAGTGAAGAAGTTGGAAAGTGTTAGCCAAGGAGAGAAGCAGTTCAGAACAGAAGTGAGCACAATAGGGACAGTGCAACATGTTAATCTTGTTCGGCTCCGTGGATTCTGTTCAGAAGGTACTAAAAGGATGCTGGTTTATGATTACATGCCAAATGGTTCCTTGGATTTCCATTTATTCATGAAAAAGGATTCTTCTAAGGTGTTGGACTGGAAAATGAGATACCAAATTGCTCTAGGAATTGCAAGGGGATTAACTTACCTCCACGAGAAGTGCCGAGACTGTATCATACACTGCGATGTAAAGCCTGAAAACATTCTCCTAGACTCCGATTTTGTTCCAAAAGTTGCGGACTTTGGCCTAGCTAAGCTAGTCGGACGAGATTTCAGCAGGGTCCTAACAACCATGAGAGGAACAAGAGGCTATCTTGCTCCAGAGTGGATTTCTGGGGTGGCTATTACAGCCAAAGCCGATGTTTACAGCTA 494 0.4413 SVVAVKKLESVSQGEKQFRTEVSTIGTVQHVNLVRLRGFCSEGTKRMLVYDYMPNGSLDFHLFMKKDSSKVLDWKMRYQIALGIARGLTYLHEKCRDCIIHCDVKPENILLDSDFVPKVADFGLAKLVGRDFSRVLTTMRGTRGYLAPEWISGVAITAKADVYS 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme172316g00001 164 Gene3D Transferase(Phosphotransferase) domain 1 53 164 - -
Trme172316g00001 164 Gene3D Phosphorylase Kinase; domain 1 1 52 - -
Trme172316g00001 164 FunFam Protein kinase superfamily protein 53 127 - -
Trme172316g00001 164 ProSiteProfiles Protein kinase domain profile. 1 164 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme172316g00001 164 ProSitePatterns Serine/Threonine protein kinases active-site signature. 99 111 IPR008271 GO:0004672|GO:0006468
Trme172316g00001 164 PANTHER OS07G0415500 PROTEIN 2 164 - -
Trme172316g00001 164 SMART serkin_6 1 164 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme172316g00001 164 Pfam Protein kinase domain 2 164 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme172316g00001 164 SUPERFAMILY Protein kinase-like (PK-like) 2 164 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme172316g00001 Trme-Chr172316 1 494 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme172316g00001 1 164 Receptor kinase-like Gene Family AT5G20050 52.907 6.48e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Trme172316g00001 Pkinase 7.4e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme172316g00001 - - gmx:100810583 306.99