Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme17205g00001 ATGTATTTTCTTACAAGTCAGGTCATGTTTTACGCTTTAGCAGTTGTGACGTTTGGTACTGCCGTGCCTGCTGGTCAATTTGTTCCCGGTATTATGATAGGATCAACTTATGGGCGTCTTGTTGGCATGTTTGTTGTAAAGTATTACAGAAAACTCAACATTGAAGAGGGAACATATGCTTTGCTAGGAGCTGCATCTTTTCTTGGAGGTTCAATGCGGATGACAGTGTCTCTATGTGTCATTATGGTTGAAATCACAAATAACTTGAAACTTTTACCTCTTATTATGCTCGTTCTTCTTATATCAAAGGCTGTTGGTGATGCTTTTAATGATGGCATATATGAAGAGCAAGCTCGATTGAGAGGCATTCCATTACTAGAATCAAAGCCCAAATATGAGATGCGGAATATGATAGCAAAGGAGGCCTGTGGGAGTGGAAGG 441 0.4014 MYFLTSQVMFYALAVVTFGTAVPAGQFVPGIMIGSTYGRLVGMFVVKYYRKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKLLPLIMLVLLISKAVGDAFNDGIYEEQARLRGIPLLESKPKYEMRNMIAKEACGSGR 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme17205g00001 147 SUPERFAMILY Clc chloride channel 4 128 IPR014743 -
Trme17205g00001 147 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 4 144 - -
Trme17205g00001 147 Gene3D Clc chloride channel 1 129 - -
Trme17205g00001 147 PRINTS Chloride channel signature 57 73 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trme17205g00001 147 PRINTS Chloride channel signature 22 42 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trme17205g00001 147 PRINTS Chloride channel signature 113 127 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trme17205g00001 147 PRINTS Chloride channel signature 75 94 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trme17205g00001 147 Pfam Voltage gated chloride channel 5 106 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme17205g00001 Trme-Chr17205 17 1376 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme17205g00001 4 147 Ion Channels AT5G26240 88.194 1.69e-75 237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme17205g00001 K05016 - gmx:100811908 255.373