Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme17193g00001 GCACTAGATAAGTCTCAGCTTGGACAGATCATCCGTGAGCAAGAACAAAAGCTTGATACACCNNNNNNNNNNANNNNNNNNNNANNTGGAATATTCCCTGTATCTTTTCTTCACCAACCCCGTCAAATACTTAAGATTTGTTTCAAATTTGCAGTGCTAGAAAATGGTGATAATTGGAGTGTAGGACAGCGGCAACTTGTTTCTCTTGGTCGAGCCCTACTCAAGCAGTCAAAGATACTTGTACTTGACGAAGCAACAGCATCTGTTGATTCTGCAACTGATAAGCTTATCCAGAAGGTTATCCGAGAAGAGTTCAGAGACTGCACTGTGTGCACTATTGCTCATCGTATTCCTACTGTTATTGACAGTGATCTTGTTCTGGTACTCAGTGATGGTCTAGTTGCAGAGTTTGACACCCCATTGAGGCTATTAGAAGATAAGTCATCCATGTTTTTGAAGTTGGTGACTGAATATTCATCGCGATCAAGTGGCATGCCGGATTTTTAA 507 0.3984 ALDKSQLGQIIREQEQKLDTPXXXXXXXXGIFPVSFLHQPRQILKICFKFAVLENGDNWSVGQRQLVSLGRALLKQSKILVLDEATASVDSATDKLIQKVIREEFRDCTVCTIAHRIPTVIDSDLVLVLSDGLVAEFDTPLRLLEDKSSMFLKLVTEYSSRSSGMPDF 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme17193g00001 168 FunFam AGAP012735-PA 39 160 - -
Trme17193g00001 168 Pfam ABC transporter 53 87 IPR003439 GO:0005524
Trme17193g00001 168 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 48 153 IPR027417 -
Trme17193g00001 168 Gene3D - 1 158 IPR027417 -
Trme17193g00001 168 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 39 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme17193g00001 Trme-Chr17193 215 822 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme17193g00001 48 155 Calmodulin-binding Proteins AT2G36910 38.532 1.16e-15 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme17193g00001 - - cam:101514243 225.328