Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme17190g00001 ATGCTTGCTCCTGTAGATGTGTTTGTCAGTACTGTGGATCCCTTGAAGGAACCTCCTCTGAATACAGCAAACACAGTTCTTTCAATCTTGGCAATGGACTACCCCATTGATAAGATATCATGCTACATTTCTGATGATGGAGCTTCGATGTGCACATTTGAAGCCCTGTCTGAAACGGCAGAGTTTGCTAGGAAGTGGGTGCCATTCTGTAAGAAATTTTTGATAGAACCTCGAGCACCAGAGAATTACTTTTCTGAGAAAATTGACTATCTAAAGGACAAGGTGCAACCCACTTTTGTCAAAGAACGTCGATCCATGAAGAGAGAATATGAAGAGTTTAAGGTAAGGATCAATGCACTTGTGGCAAAAGCCCAGAAGGTTCCACCAGGAGGGTGGATTATGCAGGATGGGACACCATGGCCAGGAAACAATACTAAGGATCATCCTGGTATGATTCAAGTCTTTCTTGGTCACAGTGGAGGTCATGATAGTGAAGGAAACCAGCTTCCTCGCCTTGTTTATGTATCCAGAGAGAAAAGGCCTGGATTTCAACACCACAAGAAAGCCGGTGCCATGAATGCTCTGGTTCGAGTCTCCGCTGTACTGACAAATGCTCCTTTCATGCTGAACTTGGATTGTGATCATTATATCAATAATAGCAAGGCTGTCCGAGAGGCCATGTGCTTCTTGATGGACCCCCAAACAGGGAAGAAGGTTTGCTATGTCCAGTTTCCTCAAAGATTCGATGGTATTGATGCACACGATCGATATGCCAACAGAAACACAGTTTTCTTTGATATTAACATGAAAGGTCTAGATGGTATTCAGGGTCCTGTATATGTCGGCACAGGGTGTGTATTTAGAAGGCAGGCTTTATATGGATATAGTCCTCCCAAGGGTCCCAAGCGTCCAAAAATG 918 0.4401 MLAPVDVFVSTVDPLKEPPLNTANTVLSILAMDYPIDKISCYISDDGASMCTFEALSETAEFARKWVPFCKKFLIEPRAPENYFSEKIDYLKDKVQPTFVKERRSMKREYEEFKVRINALVAKAQKVPPGGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGHDSEGNQLPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLMDPQTGKKVCYVQFPQRFDGIDAHDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFRRQALYGYSPPKGPKRPKM 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme17190g00001 306 Coils Coil 103 123 - -
Trme17190g00001 306 SUPERFAMILY Nucleotide-diphospho-sugar transferases 22 292 IPR029044 -
Trme17190g00001 306 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 147 295 IPR029044 -
Trme17190g00001 306 FunFam Cellulose synthase 122 296 - -
Trme17190g00001 306 Pfam Cellulose synthase 5 305 IPR005150 GO:0016020|GO:0016760|GO:0030244
Trme17190g00001 306 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 2 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme17190g00001 Trme-Chr17190 21 1240 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme17190g00001 1 306 Cell Wall Biosynthesis AT5G17420 89.869 0.0 585
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme17190g00001 K10999 - gmx:100789821 615.15