Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme171907g00001 ACAAATTCAGTGGTTGATTTTGAGAATGGTGGTGGTGGTGGTGGTGGTGGTGGAAGCAGAGTGGTAACAGATAGATCCTTCTTTCAACAACTTGAGAAAGAAGAGAATTGTGGTGATGATGATTATGAAGCATGTTTCCATCAACAAGGTAAAAAAAGGAGGCTTTCAAGTGAACAAGTTCAGTTTCTTGAAAAGAGCTTTGAGGTAGAAAACAAACTTGAACCTGAAAGGAAAGTTCAACTTGCAAAAGATCTTGGTTTACAACCAAGACAAGTTGCTATATGGTTCCAAAATAGAAGGGCAAGGTTCAAAACAAAGCAACTTGAAAAAGATTATGGCACATTGAAAGCTAGCTTTGATAATCTCAAAGATGATTACGATAATCTTCTTCAAGAGAATGACAAGTTAAAAGAAGAG 417 0.3669 TNSVVDFENGGGGGGGGGSRVVTDRSFFQQLEKEENCGDDDYEACFHQQGKKRRLSSEQVQFLEKSFEVENKLEPERKVQLAKDLGLQPRQVAIWFQNRRARFKTKQLEKDYGTLKASFDNLKDDYDNLLQENDKLKEE 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme171907g00001 139 Gene3D - 44 112 - -
Trme171907g00001 139 PRINTS Lambda-repressor HTH signature 77 86 IPR000047 GO:0003677
Trme171907g00001 139 PRINTS Lambda-repressor HTH signature 86 102 IPR000047 GO:0003677
Trme171907g00001 139 Pfam Homeodomain 51 104 IPR001356 GO:0003677
Trme171907g00001 139 Coils Coil 112 139 - -
Trme171907g00001 139 CDD homeodomain 51 107 IPR001356 GO:0003677
Trme171907g00001 139 FunFam Homeobox-leucine zipper protein HAT5 44 108 - -
Trme171907g00001 139 ProSitePatterns 'Homeobox' domain signature. 81 104 IPR017970 GO:0000981|GO:0006355
Trme171907g00001 139 SMART HOX_1 49 110 IPR001356 GO:0003677
Trme171907g00001 139 MobiDBLite consensus disorder prediction 1 21 - -
Trme171907g00001 139 SUPERFAMILY Homeodomain-like 39 108 IPR009057 -
Trme171907g00001 139 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 25 139 IPR045224 GO:0003700
Trme171907g00001 139 Pfam Homeobox associated leucine zipper 106 139 IPR003106 GO:0006355|GO:0043565
Trme171907g00001 139 ProSiteProfiles 'Homeobox' domain profile. 46 106 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme171907g00001 Trme-Chr171907 24 440 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme171907g00001 51 139 Homeobox Transcription Factor Family AT3G01470 70.787 1.37e-41 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trme171907g00001 Homeodomain 1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme171907g00001 - K09338 gmx:547565 204.912