Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme171888g00001 ATGCATCATTTATCTGAACATTCTCATGTTGTTAGAATTGAAGGAACTTATGAGGATTCTATTGCTGTTCATATTGTTATGGAGCTTTGTGAAGGAGGTGAACTTTTTGATAGGATTGTTCAAAAGGGTCATTATAGTGAAAGACAAGCTGCTACTTTGATTAAAACTATTGTTGAAGTTGTTCAATCTTGTCACTCTCTTGGTGTTATGCATAGAGATCTTAAACCTGAGAATTTTCTCTTTGATACTGTTCATGAAGATGCTAAGCTTAAAGCTACTGATTTTG 286 0.3357 MHHLSEHSHVVRIEGTYEDSIAVHIVMELCEGGELFDRIVQKGHYSERQAATLIKTIVEVVQSCHSLGVMHRDLKPENFLFDTVHEDAKLKATDF 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme171888g00001 95 Gene3D Transferase(Phosphotransferase) domain 1 1 95 - -
Trme171888g00001 95 Gene3D Phosphorylase Kinase; domain 1 12 29 - -
Trme171888g00001 95 Pfam Protein kinase domain 2 95 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme171888g00001 95 ProSitePatterns Serine/Threonine protein kinases active-site signature. 69 81 IPR008271 GO:0004672|GO:0006468
Trme171888g00001 95 PANTHER SERINE/THREONINE-PROTEIN KINASE 1 95 - -
Trme171888g00001 95 ProSiteProfiles Protein kinase domain profile. 1 95 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme171888g00001 95 SUPERFAMILY Protein kinase-like (PK-like) 1 95 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme171888g00001 Trme-Chr171888 73 358 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme171888g00001 1 95 EF-hand Containing Proteins AT1G35670 80.000 6.03e-52 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trme171888g00001 Pkinase 6.5e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme171888g00001 K13412 - gmx:100806678 183.726