Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme171837g00001 GCTTTGTGTGGAAGCCACGAATGGTTTGGTCCGGGAAGTAGAATAATCATCACAACAAGAGATATGCATCTTCTTAGGTTGTGTAGAGTTGATGAAGTGTATGCAATGCAAGAAATGGACGAAAGTGAATCTCTTGAACTTTTCAGTTGGCATGCATTCAAGCAACCAATTCCAACAGAAGATTTTAATAAACATTCAACCGATGTGATTGCTTATTCTGGGAGATTGCCACTTGCACTTCAAGTCCTTGGATCATATTTGTCTGACTGTGAAATAACTGAGTGGCAGAAAAATGTATTCCCCATGATCAAGTGCAGAAGAAGCTAA 327 0.3945 ALCGSHEWFGPGSRIIITTRDMHLLRLCRVDEVYAMQEMDESESLELFSWHAFKQPIPTEDFNKHSTDVIAYSGRLPLALQVLGSYLSDCEITEWQKNVFPMIKCRRS 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme171837g00001 108 Pfam NB-ARC domain 12 96 IPR002182 GO:0043531
Trme171837g00001 108 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 5 98 IPR044974 GO:0006952
Trme171837g00001 108 Gene3D - 38 104 IPR042197 -
Trme171837g00001 108 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 97 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme171837g00001 Trme-Chr171837 116 442 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme171837g00001 1 87 WRKY Transcription Factor Family AT5G45050 40.230 2.05e-17 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme171837g00001 - - mtr:25491558 176.407