Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme17177g00001 ATATATATTATATACATGAATTGGATTGGTTCAAGTTCAACAAGCACAAGTCATGGAAATGACAAGAAGTTAAAGGGAGTTCGGCGTCGAAAATGGGGGAAATGGGTGTCTGAGATTCGAGTTCCGGGGACTCAAGAGCGTTTATGGTTGGGAACTTACGCTACACCGGAGGCTGCTGCGGTGGCGCACGACATAGCTGTTTATTGTTTAAAGAGACCTTCTACTTTGGACAAACTCAATTTTCCTGAGATTTTGTCTTCTTATTGTATTCAACAGAGAGATCATTTGATGTCTCCGAGGTCTGTTCAGAAGGTTGCTTCAGACATTGCTATGGATGTCGATGCACGAAACATCGCAAGAGAAACAACGATGATCAATGAAACTACTCATCACATGAATGAGAATGATCAGCAGGTGCATAATGTTGTTGCTGATGATGTGTTTTGGTGGGAAGGTTTGGTTGGTGATGATGACTTGAGTTTGCAAGGAGTTACTCAAGTTTCTAGTCAACAACAAGAGGACTTGAACATTTCCATTGAAGATTATCTTTAG 552 0.4112 IYIIYMNWIGSSSTSTSHGNDKKLKGVRRRKWGKWVSEIRVPGTQERLWLGTYATPEAAAVAHDIAVYCLKRPSTLDKLNFPEILSSYCIQQRDHLMSPRSVQKVASDIAMDVDARNIARETTMINETTHHMNENDQQVHNVVADDVFWWEGLVGDDDLSLQGVTQVSSQQQEDLNISIEDYL 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme17177g00001 183 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
Trme17177g00001 183 PRINTS Ethylene responsive element binding protein signature 46 62 IPR001471 GO:0003700|GO:0006355
Trme17177g00001 183 SUPERFAMILY DNA-binding domain 23 82 IPR016177 GO:0003677
Trme17177g00001 183 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 14 138 - -
Trme17177g00001 183 Gene3D AP2/ERF domain 23 84 IPR036955 GO:0003700|GO:0006355
Trme17177g00001 183 SMART rav1_2 23 88 IPR001471 GO:0003700|GO:0006355
Trme17177g00001 183 Pfam AP2 domain 23 71 IPR001471 GO:0003700|GO:0006355
Trme17177g00001 183 CDD AP2 22 83 IPR001471 GO:0003700|GO:0006355
Trme17177g00001 183 ProSiteProfiles AP2/ERF domain profile. 23 82 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme17177g00001 Trme-Chr17177 886 1437 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme17177g00001 13 115 AP2-EREBP Transcription Factor Family AT1G71520 57.143 9.79e-39 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trme17177g00001 AP2 3.3e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme17177g00001 - - mtr:11437172 258.455