Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme17176g00001 ATGGAGTCAATGAAGGATAACGGTGTTGATGCTGGTCAAAAGCAACTAACCAAGAATGATGCATCGGATTTTCTTAATGCCGTAGAAGTTGCGTTTCAAGATAAGAGTGAAAAGTATAGTGAGTTTTTAATGGTTATTTTGGATTACGGGGCTAAAACAATTGATGCAATTGGTGTTATTTCAAGAGTGAAGGAGTTATTTAAAGGGCATGTAGATTTAATTTTGGGATTTAACAACTTCCTGCCAAAGGAATATCAAATTATTATCGATGATGATGAGTCGAAAGAAGAAGCAAAAGTCATGGAAGTGGACCAGAACGACGAGTCTGATTTAATTTTGGGATTTAACAACTTCCTGCCAAAGGAATATCAAATTATTGTTCATCTTCTTTCNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNGGATTATTGCCTCGTTAA 456 0.318 MESMKDNGVDAGQKQLTKNDASDFLNAVEVAFQDKSEKYSEFLMVILDYGAKTIDAIGVISRVKELFKGHVDLILGFNNFLPKEYQIIIDDDESKEEAKVMEVDQNDESDLILGFNNFLPKEYQIIVHLLSXXXXXXXXXXXXXXXGLLPR 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme17176g00001 151 Gene3D Paired amphipathic helix 20 82 IPR036600 GO:0006355
Trme17176g00001 151 ProSiteProfiles PAH domain profile. 14 84 IPR003822 GO:0006355
Trme17176g00001 151 Pfam Paired amphipathic helix repeat 37 81 IPR003822 GO:0006355
Trme17176g00001 151 SUPERFAMILY PAH2 domain 14 83 IPR036600 GO:0006355
Trme17176g00001 151 PANTHER SIN3B-RELATED 15 99 IPR039774 GO:0003714
Trme17176g00001 151 FunFam Paired amphipathic helix protein Sin3 20 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme17176g00001 Trme-Chr17176 571 1116 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme17176g00001 16 92 WRKY Transcription Factor Family AT4G12020 53.165 1.36e-18 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trme17176g00001 PAH 1.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme17176g00001 K11644 - tpra:123912300 112.464