Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme17139g00001 ATGGGAGAAAAGGAATGGTACTTTTTTAGTATGAGAGATCGTAAATACCCAACTGGTGTTAGAACCAATCGAGCAACTAATAGCGGATATTGGAAGACCACAGGGAAAGATAGAGAAATATTCAACAGTGTTACATCAGAATTGGTTGGTATGAAGAAGACTTTGGTTTTTTATAAAGGAAGAGCTCCAAGAGGAGAGAAAAGTAATTGGGTTATGCATGAATACCGCATTCACTCTAAATCAACATTTCGAACAAACAAGCAGGAAGAATGGGTGGTGTGTCGGATATTCAAGAAGAGTGGTAGTGGAAAAAAGTACCCTTGTAATTCCAATTCCAACCATACAAGAGCAGGATTGAATCCTTATAGCATGCAGGAAATAGGTTCTAGTAATATGGTGCAAATTCCACAACAAATGATGCAGTACTACCTTCAGGGATTGCATGGAGATCCTTCTACTCCTCATTTCCTTTACGGACGGAACAATAATAATTACATTAACGGTTCAAATACAGAGGTTTTAAGAGGAGGAATAATGCAATCTCATCAGATGAACTATCCTTCCATATTGCCATCAACTACAGGAGAAG 589 0.382 MGEKEWYFFSMRDRKYPTGVRTNRATNSGYWKTTGKDREIFNSVTSELVGMKKTLVFYKGRAPRGEKSNWVMHEYRIHSKSTFRTNKQEEWVVCRIFKKSGSGKKYPCNSNSNHTRAGLNPYSMQEIGSSNMVQIPQQMMQYYLQGLHGDPSTPHFLYGRNNNNYINGSNTEVLRGGIMQSHQMNYPSILPSTTGE 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme17139g00001 196 SUPERFAMILY NAC domain 2 99 IPR036093 GO:0003677|GO:0006355
Trme17139g00001 196 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 137 - -
Trme17139g00001 196 Gene3D NAC domain 1 103 IPR036093 GO:0003677|GO:0006355
Trme17139g00001 196 ProSiteProfiles NAC domain profile. 1 99 IPR003441 GO:0003677|GO:0006355
Trme17139g00001 196 Pfam No apical meristem (NAM) protein 2 77 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme17139g00001 Trme-Chr17139 1 1379 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme17139g00001 1 106 NAC Transcription Factor Family AT2G24430 83.019 3.46e-64 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trme17139g00001 NAM 4.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme17139g00001 - - lja:Lj1g3v2035130.1 242.662