Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme171399g00001 ATGGACAATACCGTTTGTATATGGAACGTATGGAGCAGAGATAAGAAGAAAGCATGTGCGCTAAACTTCCACAATGCTGCAGTGAAAGATGTAAAGTGGTCTCAACAAGGGCACTTCCTGCTTTCTTGTGGGTACGATTGCACATCAAGGTTGGTTGATGTTGAAAAGGGGATGGAAACTCAGGTTTTCAGAGAAGACCAGATGGTTGGAGTTATAAAATTCCACCCAGACAATTCAAATCTCTTCCTTTCTGGGGGATCAAAGGGACATATTAAACTATGGGATATCAGAACTGGAAAAGTTGTGCATAACTACAATCGAAATTTAGGCTCTATTCTAGATGTTGAGTTTACAATGAATGGGAAGCAATTCATTTCTTCTAGTGATGTATCTGGGAGCAATATCAGTGAGAATTCGATTATCGTTTGGGATGTGTCAAGACA 443 0.3995 MDNTVCIWNVWSRDKKKACALNFHNAAVKDVKWSQQGHFLLSCGYDCTSRLVDVEKGMETQVFREDQMVGVIKFHPDNSNLFLSGGSKGHIKLWDIRTGKVVHNYNRNLGSILDVEFTMNGKQFISSSDVSGSNISENSIIVWDVSR 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme171399g00001 147 SMART WD40_4 14 53 IPR001680 GO:0005515
Trme171399g00001 147 SMART WD40_4 98 144 IPR001680 GO:0005515
Trme171399g00001 147 SMART WD40_4 56 95 IPR001680 GO:0005515
Trme171399g00001 147 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 1 147 - -
Trme171399g00001 147 SUPERFAMILY WD40 repeat-like 2 146 IPR036322 GO:0005515
Trme171399g00001 147 ProSiteProfiles Trp-Asp (WD) repeats profile. 62 104 IPR001680 GO:0005515
Trme171399g00001 147 ProSiteProfiles Trp-Asp (WD) repeats profile. 21 62 IPR001680 GO:0005515
Trme171399g00001 147 Pfam Eukaryotic translation initiation factor eIF2A 14 145 IPR013979 -
Trme171399g00001 147 Gene3D - 1 147 IPR015943 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme171399g00001 2 147 U-box Gene Family AT2G33340 26.490 1.07e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme171399g00001 K24742 - lja:Lj0g3v0069539.2 280.411