Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1712g00001 ATGTTTCCTAGATCAACAAATGAAACTTTTGCGCAAAAGCTGTATCAGACGTTCAAAAACCATAAAAGGTTCACCAAACCCAAATTGTCACGTAGTGACTTCACAATTTGCCATTATGCTGGTGATGTCACTTATCAAACCGATTTATTCCTGGACAAGAACAAAGATTACGTTGTTGCAGAACATCAGGCACTTCTGTATGCTTCCCAGTGCCCCTTTGTATCTGGTTTATTTCTCCCCTCACCCGAGGAATCGTCCAATAAATCAAAGTTTTCTTCAATTGGTTCCCGGTTTAAGCAACAATTACAAGCACTACTTGAAATTCTTAGTTCCACTGAGCCACACTACATTCGTTGTGTTAAACCCAATAATCTTCTCAAGCCAGCAATTTTTGAGCACAAAAATGTTTTGCAGCAACTGCGCTGTGGAGGTGTCATGGAGGCAATCAGGATAAGCTGCGCTGGCTATCCCACCAGAAAAACGTTTGATGAATTCGTGGATCGATTCGGGCTTCTTGCACCTGAAGCTTTGGATCGTAGTTCTGATGAGGTCACTGCTTGCAAGAGGATTTTGGAGAAGGTTGGGCTTAAAGGATATCAGATTGGTTTTACCAAAGTGTTTCTTAGAGCTGGTCAAATGGCAGAACTAGATACTTATAGAAGTGAGATCTTAGGAAAGTCAGCAAGCATTATTCAAAGGAAAGTTCGTTCCTATTTGGCCCGCCGAAGTTTTGTCTCGATTCGCTTGTCTGCTATACAGATACAAGCTGCATGCAGAGGACAACTTGCTCGGAAAGTATACGAGGGATTGCGGCAAGAGGCTTCTAGTCTGATCATTCAGAGGTGTTTCCGCATGCATATTGCTAGGAAGGCATACATTGGATTGTACAGCTCAGCTATTTCTATTCAAACTGGTATGCGAGGGATGGCTGCTCGCTGTGAGCTGCGCTTTAGGAAGCAGACCAGTGCAGCTATTATCATTCAGAGCCACTGCCGGAAATACTTGGCCCAACATCATTTTATAAACTTAAAGAAGGCAGCAATTGCCACCCAATGTGCATGGAGAGGAAAAGTCGCTCGGCGAGAACTACGAAATCTCAAGATG 1104 0.4339 MFPRSTNETFAQKLYQTFKNHKRFTKPKLSRSDFTICHYAGDVTYQTDLFLDKNKDYVVAEHQALLYASQCPFVSGLFLPSPEESSNKSKFSSIGSRFKQQLQALLEILSSTEPHYIRCVKPNNLLKPAIFEHKNVLQQLRCGGVMEAIRISCAGYPTRKTFDEFVDRFGLLAPEALDRSSDEVTACKRILEKVGLKGYQIGFTKVFLRAGQMAELDTYRSEILGKSASIIQRKVRSYLARRSFVSIRLSAIQIQAACRGQLARKVYEGLRQEASSLIIQRCFRMHIARKAYIGLYSSAISIQTGMRGMAARCELRFRKQTSAAIIIQSHCRKYLAQHHFINLKKAAIATQCAWRGKVARRELRNLKM 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1712g00001 368 ProSiteProfiles IQ motif profile. 247 276 IPR000048 GO:0005515
Trme1712g00001 368 ProSiteProfiles Myosin motor domain profile. 1 221 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trme1712g00001 368 SMART iq_5 294 316 IPR000048 GO:0005515
Trme1712g00001 368 SMART iq_5 246 268 IPR000048 GO:0005515
Trme1712g00001 368 SMART iq_5 342 364 IPR000048 GO:0005515
Trme1712g00001 368 SMART iq_5 271 293 IPR000048 GO:0005515
Trme1712g00001 368 SMART iq_5 319 341 IPR000048 GO:0005515
Trme1712g00001 368 SMART iq_5 223 245 IPR000048 GO:0005515
Trme1712g00001 368 ProSiteProfiles IQ motif profile. 226 253 IPR000048 GO:0005515
Trme1712g00001 368 ProSiteProfiles IQ motif profile. 295 324 IPR000048 GO:0005515
Trme1712g00001 368 FunFam unconventional myosin-Va 323 368 - -
Trme1712g00001 368 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 276 368 IPR027417 -
Trme1712g00001 368 ProSiteProfiles IQ motif profile. 343 368 IPR000048 GO:0005515
Trme1712g00001 368 Gene3D Myosin VI head, motor domain, U50 subdomain 57 90 - -
Trme1712g00001 368 Gene3D - 1 112 - -
Trme1712g00001 368 Gene3D Kinesin motor domain 113 151 IPR036961 -
Trme1712g00001 368 PANTHER MYOSIN 1 324 - -
Trme1712g00001 368 Pfam IQ calmodulin-binding motif 250 267 IPR000048 GO:0005515
Trme1712g00001 368 Pfam IQ calmodulin-binding motif 345 364 IPR000048 GO:0005515
Trme1712g00001 368 Pfam IQ calmodulin-binding motif 321 340 IPR000048 GO:0005515
Trme1712g00001 368 Pfam IQ calmodulin-binding motif 226 244 IPR000048 GO:0005515
Trme1712g00001 368 Pfam IQ calmodulin-binding motif 297 316 IPR000048 GO:0005515
Trme1712g00001 368 Pfam IQ calmodulin-binding motif 275 292 IPR000048 GO:0005515
Trme1712g00001 368 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 274 IPR027417 -
Trme1712g00001 368 Gene3D - 274 321 - -
Trme1712g00001 368 Gene3D - 322 368 - -
Trme1712g00001 368 Gene3D - 224 273 - -
Trme1712g00001 368 FunFam Myosin XI D 224 273 - -
Trme1712g00001 368 Pfam Myosin head (motor domain) 1 209 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trme1712g00001 368 ProSiteProfiles IQ motif profile. 272 301 IPR000048 GO:0005515
Trme1712g00001 368 Gene3D - 156 219 - -
Trme1712g00001 368 ProSiteProfiles IQ motif profile. 320 349 IPR000048 GO:0005515
Trme1712g00001 368 SMART MYSc_2a 1 222 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trme1712g00001 368 FunFam unconventional myosin-Va 274 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1712g00001 Trme-Chr1712 35 2356 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1712g00001 1 368 Myosins gene family AT1G04160 73.370 0.0 577
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1712g00001 K10357 - gmx:100791070 640.958