Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme171275g00001 ATGGCTCCACCGCCACCTCCGGTGGAAAACAACGCTGAATCCACCACAACCGTTACAACCACCCCTATCTTAGAGTCTCAGAGATCTATTCCTACACCGTTTCTCACCAAAACCTATAACCTCGTTGAAGATAAATCCATCGACGATGTTATCTCATGGAATGAAGACGGATCCACCTTCATCGTTTGGAACCCTACCGTTTTCGCTAGCAATTTGCTTCCAAAACATTTCAAACACAATAATTTCTCCAGCTTCGTTCGTCAACTCAATACTTATGTAATTCAATTCATTCTCAAATTCTTTCTTAAATAA 312 0.4103 MAPPPPPVENNAESTTTVTTTPILESQRSIPTPFLTKTYNLVEDKSIDDVISWNEDGSTFIVWNPTVFASNLLPKHFKHNNFSSFVRQLNTYVIQFILKFFLK 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme171275g00001 103 MobiDBLite consensus disorder prediction 1 21 - -
Trme171275g00001 103 Pfam HSF-type DNA-binding 34 93 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trme171275g00001 103 Gene3D - 26 100 IPR036388 -
Trme171275g00001 103 SMART hsfneu3 30 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trme171275g00001 103 FunFam Heat stress transcription factor B-4 26 99 - -
Trme171275g00001 103 SUPERFAMILY "Winged helix" DNA-binding domain 31 97 IPR036390 -
Trme171275g00001 103 PRINTS Heat shock factor (HSF) domain signature 72 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trme171275g00001 103 PRINTS Heat shock factor (HSF) domain signature 34 57 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trme171275g00001 103 PRINTS Heat shock factor (HSF) domain signature 85 97 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trme171275g00001 103 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 29 92 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme171275g00001 Trme-Chr171275 2 313 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme171275g00001 26 98 HSF AT5G62020 83.562 6.10e-40 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Trme171275g00001 HSF_DNA-bind 7.7e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme171275g00001 K09419 - gmx:100812267 144.821