Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme17123g00001 ATGGCGGACAAAGCTGTTACAATCAGAACCAAGAAGTTCCTCACCAACAGGCTTCTTTCACGAAAGCAATTCGTGGTTGAAGCTAATCATCCAGGGAAACCAAATGTTTCTAGGGTTGAGCTTAAGGAAAAGCTRGCAACAATGTATGGAGTGAAGGACAATGCTGTGTTYGTCTTCGGATTCCGAACACAATTTGGAGGTGGCAAATCAACTGGTTTTGGTTTGATTTATGATTCTGTTGAAAGTGCAAAGAAATATGAGCCTAAGTACAGGCTTATCAGGGTGAGTCAACAATCACCATTACTACCTCATATTGATTATGTTCATTACAATATGCGGTAG 342 0.4035 MADKAVTIRTKKFLTNRLLSRKQFVVEANHPGKPNVSRVELKEKLATMYGVKDNAVFVFGFRTQFGGGKSTGFGLIYDSVESAKKYEPKYRLIRVSQQSPLLPHIDYVHYNMR 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme17123g00001 113 Gene3D - 1 100 - -
Trme17123g00001 113 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 6 96 IPR012678 GO:0003735|GO:0005840|GO:0006412
Trme17123g00001 113 Hamap 30S ribosomal protein S24e [rps24e]. 4 106 IPR001976 GO:0003735|GO:0005840|GO:0006412
Trme17123g00001 113 ProSitePatterns Ribosomal protein S24e signature. 65 87 IPR018098 -
Trme17123g00001 113 PANTHER 40S RIBOSOMAL PROTEIN S24 1 95 IPR001976 GO:0003735|GO:0005840|GO:0006412
Trme17123g00001 113 Pfam Ribosomal protein S24e 25 96 IPR001976 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme17123g00001 Trme-Chr17123 422 1216 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme17123g00001 1 94 Cytoplasmic Ribosomal Protein Gene Family AT5G28060 73.684 2.31e-48 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme17123g00001 K02974 - aew:130786212 160.614