Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme17041g00001 GACAAAGAGTTGCGCTATCGCTTTATCTATAATCATTTTCCAAGTTTACAAGAGGAGGACATCATAGGAAAAACAGATGTCGAAATTTTCACGGGAGCAGGTGTGAAAGAGTCTCAAGATTTTAAAAGAGAAGTAATGGAGAAAGGAGTAGCTGCAAAAAAGGAAATAACCTTTGAGACGGAACTATTTGGATTTAAGACATTTTTGATATATGTAGAACCTGTGTTTAGCAAAGCCGGTGAAACAATCGGAGTAAACTATATGGGAATGGAAATCACAGATCAGGTGAGAAAAAGAGAAAGAATGGCGAAACTAAGGGAAGAAATTGCAGTTCAGAAAGCAAAGGAAACAGAACTTAATAAAACCATTCACATTACAGAGGAGACAATGAGAGCTAAACAGATGCTGGCAACAATGTCTCATGAGATAAGATCGCCGCTTTCTGGTGTTGTTAGCATGGCTGAAATTCTTACTACCACAAAACTTGATAAGGAGCAAAGACAGCTCTTGGATGTCATGATATCTTCAGGAGATTTGGTTCTTCAACTTATAAATGACATACTTGATCTTTCCAAGGTTGAATCAG 586 0.3754 DKELRYRFIYNHFPSLQEEDIIGKTDVEIFTGAGVKESQDFKREVMEKGVAAKKEITFETELFGFKTFLIYVEPVFSKAGETIGVNYMGMEITDQVRKRERMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILTTTKLDKEQRQLLDVMISSGDLVLQLINDILDLSKVES 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme17041g00001 195 FunFam Putative histidine kinase 5 119 195 - -
Trme17041g00001 195 Gene3D - 126 195 - -
Trme17041g00001 195 ProSiteProfiles Histidine kinase domain profile. 138 195 IPR005467 -
Trme17041g00001 195 Pfam His Kinase A (phospho-acceptor) domain 133 195 IPR003661 GO:0000155|GO:0007165
Trme17041g00001 195 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 127 195 IPR036097 GO:0000155|GO:0007165
Trme17041g00001 195 FunFam Histidine kinase 5 1 108 - -
Trme17041g00001 195 Gene3D PAS domain 1 108 - -
Trme17041g00001 195 Coils Coil 102 122 - -
Trme17041g00001 195 CDD HisKA 133 192 IPR003661 GO:0000155|GO:0007165
Trme17041g00001 195 SMART HisKA_10 131 195 IPR003661 GO:0000155|GO:0007165
Trme17041g00001 195 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 1 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme17041g00001 Trme-Chr17041 196 1062 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme17041g00001 1 195 Histidine Kinase Gene Family AT5G10720 83.590 1.86e-111 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme17041g00001 - - cam:101512841 367.081