Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme17040g00001 GTGGTTGAAGAAATCATCAAAGATATTCAAGATCAAGGCAAAGGTAATAAAAGAGCAAGTTGCATAGTTGATGACGAGGAAGAGGAAAACACAAGAGAGAATTGGAAAGGTATAATTAGGAGAAAGAGGTGTGTTGAAGAGGATGATGATGAAATGAGGAAGTTCAATCCAAGAGATCCAAATTTTTTACCTTTGGTTCCTGAAAAAGAAAAGGAAAAAGTTGATTTGAGGCATCAAATGATGGATGAGAGAAAGAATGCAGAAGATTGGATGGTTGATTGTGCACTAAGACAAGTTGTTAACAAGCTTGCTCCTGCTAGGAAGAAGAAGGTTGCATTGCTAGTTGAAGCATTTGAAACTGTTATACCTAAATGTGAATCTCATTTGAGAAACAAATCAGGGTTTGCTCATGCTAGACACATTCAAGCTTGTAGCTGA 438 0.3699 VVEEIIKDIQDQGKGNKRASCIVDDEEEENTRENWKGIIRRKRCVEEDDDEMRKFNPRDPNFLPLVPEKEKEKVDLRHQMMDERKNAEDWMVDCALRQVVNKLAPARKKKVALLVEAFETVIPKCESHLRNKSGFAHARHIQACS 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme17040g00001 145 SMART CaM_binding_2 11 123 IPR012417 GO:0005516
Trme17040g00001 145 Pfam Plant calmodulin-binding domain 17 123 IPR012417 GO:0005516
Trme17040g00001 145 PANTHER CALMODULIN-BINDING PROTEIN-RELATED 26 123 IPR044681 GO:0005516
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme17040g00001 Trme-Chr17040 1 438 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme17040g00001 26 145 Calmodulin-binding Proteins AT2G38800 53.719 1.88e-34 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme17040g00001 - - tpra:123913208 290.426