Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme170299g00001 ATGAAAGCATACAACTTATATGAGAACAATTTCACTTTATGTTATCTTTTGTTTTATGTGGCAGAAGTTCTCCTTGCTTTGGAGTATTTGCTCATGCTTGGGATACTCTATAGAGACCTTAAACCTAAGAATGTGTCGGTGAGAGAAGACGGTCATATAATGCTTTCAGATTTCGATCTCTCTCTAAGGTGCAGCGTCAGTCCAACTCTCGTGAAGTCTTCAAACCCGATCGCTGAAACAAAAAGCTCAGGATACTGCATTCAGCCTGCCTGCAT 275 0.4073 MKAYNLYENNFTLCYLLFYVAEVLLALEYLLMLGILYRDLKPKNVSVREDGHIMLSDFDLSLRCSVSPTLVKSSNPIAETKSSGYCIQPAC 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme170299g00001 91 PANTHER FLIPPASE KINASE 1-RELATED 17 79 - -
Trme170299g00001 91 ProSiteProfiles Protein kinase domain profile. 1 91 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme170299g00001 91 FunFam Serine/threonine-protein kinase OXI1 3 66 - -
Trme170299g00001 91 Pfam Protein kinase domain 8 68 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme170299g00001 91 Gene3D Transferase(Phosphotransferase) domain 1 12 64 - -
Trme170299g00001 91 SUPERFAMILY Protein kinase-like (PK-like) 6 71 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme170299g00001 Trme-Chr170299 1 378 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme170299g00001 18 91 AGC Kinase Gene Family AT3G27580 78.378 1.93e-36 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Trme170299g00001 Pkinase 1e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme170299g00001 K08286 - sind:105177089 120.553