Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme170008g00001 GCCAGAGCATTGGATGTTCTGAACTTCACTCCTCTCAACAACAGGCTCATTCGTATCATGTATTCACATCGCGATCCCAGTATCCGCAAAAGTGGTCAAGGAAATATATTTATTAAGAATTTGGACAGGGCAATTGACCATAAGGCATTGCACGATACCTTTTCTTCATTTGGGAATATCCTTTCTTGCAAGGTAGCTGTGGATGGATCTGGCCAATCTAAAGGCTATGGCTTTGTGCAATTCGATAGTGAGGAGGCTGCTCAAAAAGCTATTGAAAAGCTTAATGG 287 0.4216 ARALDVLNFTPLNNRLIRIMYSHRDPSIRKSGQGNIFIKNLDRAIDHKALHDTFSSFGNILSCKVAVDGSGQSKGYGFVQFDSEEAAQKAIEKLNG 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme170008g00001 96 SMART rrm1_1 35 96 IPR000504 GO:0003723
Trme170008g00001 96 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 96 IPR000504 GO:0003723
Trme170008g00001 96 Gene3D - 3 96 IPR012677 -
Trme170008g00001 96 FunFam Polyadenylate-binding protein 28 96 - -
Trme170008g00001 96 PANTHER RNA BINDING PROTEIN 2 96 - -
Trme170008g00001 96 CDD RRM2_I_PABPs 32 96 IPR045305 -
Trme170008g00001 96 SUPERFAMILY RNA-binding domain, RBD 9 96 IPR035979 GO:0003676
Trme170008g00001 96 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 96 IPR000504 GO:0003723
Trme170008g00001 96 Gene3D - 30 84 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme170008g00001 Trme-Chr170008 1 417 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme170008g00001 1 96 Eukaryotic Initiation Factors Gene Family AT4G34110 78.125 4.42e-49 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme170008g00001 K13126 - gmx:100813735 184.111