Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme16g00002 ATGTCTTCCATCACCATGGCTAACTCAGGCATCTATGTCAAACTGACCAAAATATCTGAAATTACTGGTGGGAAAATTGATTTCCAGTTGAGAGTACGAGTAATCAATCTCTGGTCTACACCAGATCGTGCTGATCCCACTGAGGAAGGAGCTCTACATATGATTTTCCTTGACAAGGATTGTGGAAGGATCTATGCCAATGTGAGAAAAGATCTACTTGCCCAATTCAAGGATGACATTGAGGAAGGTGCTGCTTATATTGTGGAAAGGTTTATGGTTGGCAAGAATGACTCTTCCTTCAAGAGTACTCCTCATAAGCACAAACTCAATTTTATGCGTGGCACTAAAATGATCAAAGTCAATGCCACTGAGATACCACCAAATCATTTCGACTTCATGCCTTTCATCGAAATCCTCGCAGCTACTAAAGAGGATCAATTTCTTGATGTTATTGGTCATGTTGTTGAAAAGAATAGCATGAAAGAAACCCAGAAAAATCGTAAAATAAGTAAGATAATGGATGCCACTCTTGAAGATTTGGAAGGGAATAGAATTCATTGTACCTTATGGGATGATTATGCTGTGAAAATGCTACAGTTCCTTGATAGTCATGATCCATCTCTCCCTGTGATACTTATTCTTCAGCTATGTAAGCTCAAGAAGTATCTTGGTTCTATGGGAGTTTCTAATTCTTTCTATGAATCCAAACTATTTTTGAATGTTGATCTCCCTCAAGTTACTGCCTATATAGAAAGGATGAATGCTGCCAATGTAGAATTAACTAAAGTTGTTAGTCAAATGTCTGGACCTGCTGTCCTCAATGTCGCTGATGATTTGTTGCACACACCTAGAATGACAATCGAGGATCTAATTGAATCTACTCAGAAATGCTCTGGGTCTGTTTTGGCATGGGCTTGTGAGTTCGATATGGACGCCGGTTGGTTTTATCAGGCATGCACTAAGTGTGCTTCTAGAATAAACTTTGTGGCAGGTCAACTATACTGCGATAAGTGTAAAATGTCGCGGACTTCCGTGCCTAGGTTCAAGGTTCACCTCCAGGTTATTGATGATACAGGATCTATAACTTTTGTCATGTTTGATCGCGTGGTTTTTCAAGTTGTGGGACGGACAGCCCAGGATCTCCTTGATGCTATGAATGATGATCCTAGATCTCCTTCTTACCCTCGAGAGCTTGACATGTTTATCAACAAATGGATGCTTTTCAAGGTTGAAGTAACTGATGCCAATTTGTACCGTAACTGGCGTGGGTACACGGTGAAGAAATTTACTTCCGATGATGAAGTTATAAGCCGTTTCACTTCACTCTATGGAATTAATTTGGATGCCAATGCTGATGATGCCAGCTTCAACAACTCTCTGTTTGATTTAGGAGAAGATGCTCTTCCGGGTGCACTTGATGGAGTTGAGTCAAGCTACAAGGGAGACATTGTGAAATCCAGTGCTAGGAAGTTTATAATTCTTGATGAGGATGATCTAGATCCATCAAATGTGGATAATCCATCTACCAGCAAACCAAGTGAAAAAAGGTCAGCTGATGTTGATGAAGGCCAGGTTGCTGCCCCAAAGGAGACAAAGCTTGCATGTGTCAAGATTGAGGATGATGATACTTCACTTCGTCATAACCATGGTGACCATCACATGATATGCGAATCTAATACTGAACAATTCGATATACCTTCTAATGCAGATATACTTGCTCCATTGGTCCCCAACATTGATGTAGATCCCATGACATGCACATGCACCACTAATTGTGAGCAATTTGGTGTGCCTTCTAATTATGCGGATGGTGATGGCTTGTATGACGATAACAATTGTACTGATGAACATACATATTATGATGCAGTGGCTGAGAACCCCGCCTATTTCAATATTGGTCAGCCGAATTGCATGTGTCCAGATTGTGGTGCAATAATGTGGCTAGAAGAACGCGTGAAAAGGGGCTCAAAATCCAAACCAAAATTTTCATTATGTTGTAGTAAAGGGGATATAGAGCTTGCACCCTATATGCCTTTGCCCGAACCTTTACGTACTTTATATCACGGTGGTGATAATAGAAGCAAATTCTTTCTTGAAAACATAAGGTCTTTTAACAGTATGTTTGCTTTTACATCAATGGGTGGCAAGATTGAAACTTCTTTGAACGATGGAAATGCACCTCCTGTTTTCCTCATGAATGGTGAAAATTATCATCTAATTGGAAGTTTGCTTCCCTTGCCAGATAGGCCTCCTAAATTCGCCCAGCTGTACATATACGATACTGATAACGAGATATCTAATAGAATGGCATCTGTTGGGGATATACGATTTGCTCTACACCGTTGTAACAATCCTTATGTTCGTGCGTATACCATGATTCGGGATACCTTGAATTTTCAAGCATCTCCAAACATTAAGTTACGTCTGTTGGGCAAGAGATGTTGTGATGGTAGACGGTATAATCTTCCGTCTACTTCTGAAGTTGCTCTGGTTGTCGGTGACTTTGATTCAGCTGACTTCGACCGCGATGTCGTTGTTCAAACTCAAACTGGTCTTCTGCAACGTATCTCAACATTTGAACCAGCTTACTGGCCCTTGCATACAATAGAGTCTGATCGTTTGAGATACATGAGAGATCATCAGAAAGATCTAAGGGCTGCTATGTACAAGGGATTAACGGAAGCCATCCTTAAAGGTGACTGCGATGCAACAACCGCAGGAAAACGGATAGTTTTGCCTGCGAGTTTCGTTGGTGGAGCGAGATATATGATACAGAACTATCAAGATGAAATGTCCATCTGTGCTTGGGCTGGATATCCTGATATATTTGTGACATTCACTTGCAACCATAAGTGGCCGGAAATCGTGGAATTTTTGAAAGTCCATAAACTTAGACCTTCCGATCGCCCTGACTTGATAAGTCGATTATTTAAGATATCAAGGAAGGCAGCATTTTCGGCAAAGTTAAAGCAGGCTGCCAACAACCGAACCATCTATTTTAAGCTGTCTCCTTTCATCAGTGTCCGAACAACAGGTTATGCTCCTTCAACGGTTGGCAATAGGAAGATATTTTATCAAGAGCAGCATTACTTTATGATATAG 3102 0.4084 MSSITMANSGIYVKLTKISEITGGKIDFQLRVRVINLWSTPDRADPTEEGALHMIFLDKDCGRIYANVRKDLLAQFKDDIEEGAAYIVERFMVGKNDSSFKSTPHKHKLNFMRGTKMIKVNATEIPPNHFDFMPFIEILAATKEDQFLDVIGHVVEKNSMKETQKNRKISKIMDATLEDLEGNRIHCTLWDDYAVKMLQFLDSHDPSLPVILILQLCKLKKYLGSMGVSNSFYESKLFLNVDLPQVTAYIERMNAANVELTKVVSQMSGPAVLNVADDLLHTPRMTIEDLIESTQKCSGSVLAWACEFDMDAGWFYQACTKCASRINFVAGQLYCDKCKMSRTSVPRFKVHLQVIDDTGSITFVMFDRVVFQVVGRTAQDLLDAMNDDPRSPSYPRELDMFINKWMLFKVEVTDANLYRNWRGYTVKKFTSDDEVISRFTSLYGINLDANADDASFNNSLFDLGEDALPGALDGVESSYKGDIVKSSARKFIILDEDDLDPSNVDNPSTSKPSEKRSADVDEGQVAAPKETKLACVKIEDDDTSLRHNHGDHHMICESNTEQFDIPSNADILAPLVPNIDVDPMTCTCTTNCEQFGVPSNYADGDGLYDDNNCTDEHTYYDAVAENPAYFNIGQPNCMCPDCGAIMWLEERVKRGSKSKPKFSLCCSKGDIELAPYMPLPEPLRTLYHGGDNRSKFFLENIRSFNSMFAFTSMGGKIETSLNDGNAPPVFLMNGENYHLIGSLLPLPDRPPKFAQLYIYDTDNEISNRMASVGDIRFALHRCNNPYVRAYTMIRDTLNFQASPNIKLRLLGKRCCDGRRYNLPSTSEVALVVGDFDSADFDRDVVVQTQTGLLQRISTFEPAYWPLHTIESDRLRYMRDHQKDLRAAMYKGLTEAILKGDCDATTAGKRIVLPASFVGGARYMIQNYQDEMSICAWAGYPDIFVTFTCNHKWPEIVEFLKVHKLRPSDRPDLISRLFKISRKAAFSAKLKQAANNRTIYFKLSPFISVRTTGYAPSTVGNRKIFYQEQHYFMI 1033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme16g00002 1033 Pfam Domain of unknown function DUF223 54 142 IPR003871 -
Trme16g00002 1033 Pfam Replication factor-A C terminal domain 313 412 IPR013955 -
Trme16g00002 1033 PANTHER DNA BINDING PROTEIN-LIKE 679 981 - -
Trme16g00002 1033 Gene3D - 123 262 IPR012340 -
Trme16g00002 1033 CDD RPA1_DBD_C 300 433 IPR047192 -
Trme16g00002 1033 CDD RPA1_DBD_A_like 30 117 - -
Trme16g00002 1033 CDD RPA1_DBD_B_like 149 253 - -
Trme16g00002 1033 SUPERFAMILY Nucleic acid-binding proteins 14 120 IPR012340 -
Trme16g00002 1033 Gene3D - 14 122 IPR012340 -
Trme16g00002 1033 SUPERFAMILY Nucleic acid-binding proteins 282 431 IPR012340 -
Trme16g00002 1033 SUPERFAMILY Nucleic acid-binding proteins 129 255 IPR012340 -
Trme16g00002 1033 MobiDBLite consensus disorder prediction 499 524 - -
Trme16g00002 1033 Gene3D - 277 437 IPR012340 -
Trme16g00002 1033 Pfam Helitron helicase-like domain at N-terminus 868 989 IPR025476 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme16g00002 Trme-Chr16 3363 9364 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme16g00002 28 413 Core DNA Replication Machinery Family AT5G08020 22.750 7.86e-15 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme16g00002 - - tpra:123896123 771.541