Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme16990g00001 ATGTTTACTAGTAGTAGCAGCTCTTCCTCAGAACCTTCCTCTTCCTCCCGCACGATATCACTGCCGAATTTAGAGGTCTCTCATGGGATATCGTTTTCCAACGAGGAGGTGCGGTTAGCTGCAACTACCCCGAAGAAGCGTGCAGGGAGAAAGAAGTTCAAGGAGACACGCCACCCAGTTTACAGAGGTGTTAGGAGGAGGAACTTAGATAAATGGGTGTGTGAAATGAGGGAGCCTAACAAGAAGACTAAGATTTGGCTAGGGACTTTTCCAACGGCCGAAATGGCAGCCAGAGCACATGATGTTGCGGCATTGGCATTGAGAGGTCGTAATGCTTGTCTAAACTTTGCAGACTCGGCTTCGCGGCTTCCTATACCTGCAACTAAAGAGACAAAAGATATACAAAAGGCAGCTGCAGAAGCAGCTGAGGCTTTCAGACCAGACAATATTTTAATGACTAACGAAATTGATGACACGGCTGAAGCTTCCGCCGCTACAGAGGAGCCGTTTATGCTTAGTTTGGAAGAGGAAGAAGAAGGAGAGTTGAACATTCCAGAGTCGTTGAGGAATATGGCACTAATGTCACCTACACRTAGCTTGGAGCATGAGTATGAACATATTAATGAAGATTTTCAAGATGTTGAGGTGTCACTATGGAGTTTTTCAATTTGA 672 0.4554 MFTSSSSSSSEPSSSSRTISLPNLEVSHGISFSNEEVRLAATTPKKRAGRKKFKETRHPVYRGVRRRNLDKWVCEMREPNKKTKIWLGTFPTAEMAARAHDVAALALRGRNACLNFADSASRLPIPATKETKDIQKAAAEAAEAFRPDNILMTNEIDDTAEASAATEEPFMLSLEEEEEGELNIPESLRNMALMSPTXSLEHEYEHINEDFQDVEVSLWSFSI 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme16990g00001 223 MobiDBLite consensus disorder prediction 1 21 - -
Trme16990g00001 223 Pfam AP2 domain 59 109 IPR001471 GO:0003700|GO:0006355
Trme16990g00001 223 FunFam Ethylene-responsive transcription factor 2 59 118 - -
Trme16990g00001 223 PRINTS Ethylene responsive element binding protein signature 83 99 IPR001471 GO:0003700|GO:0006355
Trme16990g00001 223 PRINTS Ethylene responsive element binding protein signature 61 72 IPR001471 GO:0003700|GO:0006355
Trme16990g00001 223 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 4 221 IPR045277 GO:0003700
Trme16990g00001 223 Gene3D AP2/ERF domain 60 118 IPR036955 GO:0003700|GO:0006355
Trme16990g00001 223 CDD AP2 61 119 IPR001471 GO:0003700|GO:0006355
Trme16990g00001 223 PIRSF PTI6 159 222 IPR017392 GO:0003700
Trme16990g00001 223 PIRSF PTI6 2 155 IPR017392 GO:0003700
Trme16990g00001 223 ProSiteProfiles AP2/ERF domain profile. 60 117 IPR001471 GO:0003700|GO:0006355
Trme16990g00001 223 SMART rav1_2 60 123 IPR001471 GO:0003700|GO:0006355
Trme16990g00001 223 SUPERFAMILY DNA-binding domain 60 119 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme16990g00001 Trme-Chr16990 209 880 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme16990g00001 26 221 AP2-EREBP Transcription Factor Family AT4G25470 53.695 1.23e-63 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trme16990g00001 AP2 8.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme16990g00001 - - psat:127130221 299.286