Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme16974g00001 ATGCAAGCTCATAGGATTTATGGAAACAAATGGGCCATGATTGCTAGGCTTTTTCCTGGAAGAACTGATAATGCTGTTAAGAATCACTGGCATGTTATAATGGCTAGAAAGTACAGAGAACAATCCAGTGCTTACAGAAGAAGGAGGCTGAATCAATCTGTTTACAGAAGAATAGAAGATAATGCAAACTTTGTCTCTAGAGATATAGCCACAGGGATGGAACCAGTACCATCACCCTATTGTATTAACCTCCCAAATGGTTATAACATGACTACTAGTTTCCCATTTTCATCTTTCCATGGAGTAATTGATGGTGGTGTTGATTGTGGCTTAAATGGTTCAGCTCATTTGTCTGGTAGCAAAGAAGCAATCTCAAGTAACAAACAGACCCCTAGTAGCCTTTTTGGCTTGTTTGCTCAACAGACACCACTTGATTTCATTTCTGGAGGTATAAGAAATGATCATTATAGCCAAATGAAATGCTGGGATAATCAACCAACTGGTTTTTACCATCAATATCCTCAATATATGATGCAAATGCAACAACAAAACAACAATTTTTACAGTTTCTCATCAAATTCAACTACAGCAGCAACATCAACAACACAGATATTAGGCAGTGAAGTTTCACTATCATCAGTGGCAGCAACAGAAGATCACAGAGATCAAGTTCTGATGAGTAATCCCCCTCCTTCAGATACAATTCCATTTATTGATTTCCTTGGAGTAGGAGCCACAACATGA 744 0.3817 MQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRLNQSVYRRIEDNANFVSRDIATGMEPVPSPYCINLPNGYNMTTSFPFSSFHGVIDGGVDCGLNGSAHLSGSKEAISSNKQTPSSLFGLFAQQTPLDFISGGIRNDHYSQMKCWDNQPTGFYHQYPQYMMQMQQQNNNFYSFSSNSTTAATSTTQILGSEVSLSSVAATEDHRDQVLMSNPPPSDTIPFIDFLGVGATT 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme16974g00001 247 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 38 IPR017930 -
Trme16974g00001 247 Pfam Myb-like DNA-binding domain 2 32 IPR001005 -
Trme16974g00001 247 Gene3D - 1 60 - -
Trme16974g00001 247 CDD SANT 2 31 IPR001005 -
Trme16974g00001 247 PANTHER MYB PROTEIN-RELATED 1 163 - -
Trme16974g00001 247 SUPERFAMILY Homeodomain-like 2 41 IPR009057 -
Trme16974g00001 247 ProSiteProfiles Myb-like domain profile. 1 34 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme16974g00001 Trme-Chr16974 297 1332 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme16974g00001 1 50 MYB Transcription Factor Family AT1G26780 90.000 3.35e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trme16974g00001 Myb_DNA-binding 1.7e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme16974g00001 K09422 - pop:7460696 205.297