Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme169705g00001 | ATGTCATCTGTCACGGCAATAGACACAAGTGGTCTTGAAACTTTAGGTGAACTTAGAAAGGTGCTAGAACAGCGATCACTTCAGCTTGTGTTGGTAAATCCTGTTGGAAATGTGATGGAAAAGTTGCATACGTCGAAAATTTTGGATACCTTTGGATTTAAAGGAGTCTATCTCACAGTTGGAGAAGCTGTGGCTGATATTTCCTCAGCTAATAAAGCTCAACCATGA | 228 | 0.4035 | MSSVTAIDTSGLETLGELRKVLEQRSLQLVLVNPVGNVMEKLHTSKILDTFGFKGVYLTVGEAVADISSANKAQP | 75 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme169705g00001 | 75 | CDD | STAS_SulP_like_sulfate_transporter | 1 | 60 | - | - | |
| Trme169705g00001 | 75 | SUPERFAMILY | SpoIIaa-like | 1 | 65 | IPR036513 | - | |
| Trme169705g00001 | 75 | Gene3D | STAS domain | 1 | 75 | IPR036513 | - | |
| Trme169705g00001 | 75 | ProSiteProfiles | STAS domain profile. | 1 | 67 | IPR002645 | - | |
| Trme169705g00001 | 75 | Pfam | STAS domain | 1 | 63 | IPR002645 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trme169705g00001 | Trme-Chr169705 | 46 | 470 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme169705g00001 | 1 | 75 | Inorganic Solute Cotransporters | AT3G15990 | 68.831 | 8.45e-29 | 105 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme169705g00001 | K17471 | - | gmx:100780331 | 119.398 |