Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme169525g00001 ATGCACATGCAACCTGAATACCAGCAGGTCTCATTAGAACCTCACACCGAACAACGCGTAGAGCAGCCATCTTATACTCTAAGTGAAGCTTCAGAGCAGCAAATGGTAGTACATGTATCAGAACCTAGAAATACTCAAATGGAAACGTCGGAGATTTCACATTNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTACAACTGGCGTAAGTATGGACAGAAGCAGGTTAAGGGGAGCGAGTATCCACGGAGCTACTACAAATGCACGCATCTGAATTGTCCTGTGAAGAAAAAAGTTGAGCGTGCCCCTGATGGTCACATAACTGAAATCATCTATAAGGGCCAACATAACCACGATAAGCCTCAGGCGAATAAGCGTGCCAAAGAAAATAGTGATGCGAATGGAAATGCAAATGTTCAACC 446 0.3857 MHMQPEYQQVSLEPHTEQRVEQPSYTLSEASEQQMVVHVSEPRNTQMETSEISHXXXXXXXXXXXXXXXXXXXYNWRKYGQKQVKGSEYPRSYYKCTHLNCPVKKKVERAPDGHITEIIYKGQHNHDKPQANKRAKENSDANGNANVQP 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme169525g00001 149 Pfam WRKY DNA -binding domain 74 127 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme169525g00001 149 MobiDBLite consensus disorder prediction 120 135 - -
Trme169525g00001 149 SUPERFAMILY WRKY DNA-binding domain 72 129 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trme169525g00001 149 MobiDBLite consensus disorder prediction 9 30 - -
Trme169525g00001 149 SMART WRKY_cls 70 128 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme169525g00001 149 Gene3D WRKY domain 64 130 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trme169525g00001 149 ProSiteProfiles WRKY domain profile. 74 129 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme169525g00001 149 MobiDBLite consensus disorder prediction 1 30 - -
Trme169525g00001 149 MobiDBLite consensus disorder prediction 120 149 - -
Trme169525g00001 149 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 27 141 IPR044810 GO:0003700
Trme169525g00001 149 FunFam WRKY transcription factor 63 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme169525g00001 Trme-Chr169525 1 446 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme169525g00001 74 142 WRKY Transcription Factor Family AT3G01080 71.014 2.24e-32 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trme169525g00001 WRKY 4.1e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme169525g00001 - - vvo:131608851 223.402