Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme169393g00001 TCATTTGGCTGGCAAGAGAGGTACCGGGTGGCTGTGGGTGTGGCTGAGGCCTTGGATTATCTGCATAACGGCTGTGCACGGGCTGTAATCCATAGGGATGTCAAATCTTCTAATATCCTTCTTTCAGACGATTTTGAGGCTCAGCTCTCAGATTTTGGACTGGCTAGTTGGGATTCTTCTTCCCATATTATTTGTACTGATGTGGCTGGAACTTTTGGGTACCTAGCTCCCGAATATTTTATGCACGGTAGAGTAACCGACAAAATTGATGTTTATGCTTTTGGTGTTGTACTCCTTGAGCTT 303 0.4521 SFGWQERYRVAVGVAEALDYLHNGCARAVIHRDVKSSNILLSDDFEAQLSDFGLASWDSSSHIICTDVAGTFGYLAPEYFMHGRVTDKIDVYAFGVVLLEL 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme169393g00001 101 PANTHER OS08G0249100 PROTEIN 2 101 IPR046958 -
Trme169393g00001 101 Gene3D Transferase(Phosphotransferase) domain 1 1 101 - -
Trme169393g00001 101 SUPERFAMILY Protein kinase-like (PK-like) 2 101 IPR011009 -
Trme169393g00001 101 ProSiteProfiles Protein kinase domain profile. 1 101 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme169393g00001 101 Pfam Protein kinase domain 9 101 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme169393g00001 101 ProSitePatterns Serine/Threonine protein kinases active-site signature. 29 41 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme169393g00001 Trme-Chr169393 1 499 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme169393g00001 4 101 Trihelix Transcription Factor Family AT4G32710 58.824 2.20e-35 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Trme169393g00001 Pkinase 2.6e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme169393g00001 - - gmx:100817908 194.126