Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme169389g00001 GTTGGTAAAGAGGCTGGTGAGAAGTGGAGGTCTTTGACTGATGAAGAGAAGAAGCCTTATTTGGATAGAGTTATTGAACTGAAGGCAGAATATGAGAAGGCTATGGAAATCTATAATGCTACTAAAAAGGACGATCAAGAAGAGGGTTCTGATAAGTCTGATAAGGAAGCCCCTGCAGTAGAAGAGGTGGAAGAGTTAACAGATGAGGAGTAG 213 0.4178 VGKEAGEKWRSLTDEEKKPYLDRVIELKAEYEKAMEIYNATKKDDQEEGSDKSDKEAPAVEEVEELTDEE 70
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme169389g00001 70 MobiDBLite consensus disorder prediction 39 70 - -
Trme169389g00001 70 Pfam HMG (high mobility group) box 1 39 IPR009071 -
Trme169389g00001 70 MobiDBLite consensus disorder prediction 39 60 - -
Trme169389g00001 70 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 1 39 IPR009071 -
Trme169389g00001 70 SUPERFAMILY HMG-box 2 43 IPR036910 -
Trme169389g00001 70 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 64 IPR031061 -
Trme169389g00001 70 Coils Coil 24 48 - -
Trme169389g00001 70 Gene3D High mobility group box domain 1 62 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme169389g00001 Trme-Chr169389 56 466 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Trme169389g00001 HMG_box 3.7e-09 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme169389g00001 K25507 - gmx:100306558 85.1149